A general method to optimize and functionalize red-shifted rhodamine dyes
Grimm, Jonathan B., Tkachuk, Ariana N., Xie, Liangqi, Choi, Heejun, Mohar, Boaz, Falco, Natalie, Schaefer, Kathy, Patel, Ronak, Zheng, Qinsi, Liu, Zhe, Lippincott-Schwartz, Jennifer, Brown, Timothy A., Lavis, Luke D.
Published in Nature methods (01.08.2020)
Published in Nature methods (01.08.2020)
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Journal Article
A dynamic mode of mitotic bookmarking by transcription factors
Teves, Sheila S, An, Luye, Hansen, Anders S, Xie, Liangqi, Darzacq, Xavier, Tjian, Robert
Published in eLife (19.11.2016)
Published in eLife (19.11.2016)
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Journal Article
A stable mode of bookmarking by TBP recruits RNA polymerase II to mitotic chromosomes
Teves, Sheila S, An, Luye, Bhargava-Shah, Aarohi, Xie, Liangqi, Darzacq, Xavier, Tjian, Robert
Published in eLife (25.06.2018)
Published in eLife (25.06.2018)
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Journal Article
Dynamics of CRISPR-Cas9 genome interrogation in living cells
Knight, Spencer C., Xie, Liangqi, Deng, Wulan, Guglielmi, Benjamin, Witkowsky, Lea B., Bosanac, Lana, Zhang, Elisa T., Beheiry, Mohamed El, Masson, Jean-Baptiste, Dahan, Maxime, Liu, Zhe, Doudna, Jennifer A., Tjian, Robert
Published in Science (American Association for the Advancement of Science) (13.11.2015)
Published in Science (American Association for the Advancement of Science) (13.11.2015)
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Journal Article
3D ATAC-PALM: super-resolution imaging of the accessible genome
Xie, Liangqi, Dong, Peng, Chen, Xingqi, Hsieh, Tsung-Han S., Banala, Sambashiva, De Marzio, Margherita, English, Brian P., Qi, Yifeng, Jung, Seol Kyoung, Kieffer-Kwon, Kyong-Rim, Legant, Wesley R., Hansen, Anders S., Schulmann, Anton, Casellas, Rafael, Zhang, Bin, Betzig, Eric, Lavis, Luke D., Chang, Howard Y., Tjian, Robert, Liu, Zhe
Published in Nature methods (01.04.2020)
Published in Nature methods (01.04.2020)
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Journal Article
A General Method to Improve Fluorophores Using Deuterated Auxochromes
Grimm, Jonathan B., Xie, Liangqi, Casler, Jason C., Patel, Ronak, Tkachuk, Ariana N., Falco, Natalie, Choi, Heejun, Lippincott-Schwartz, Jennifer, Brown, Timothy A., Glick, Benjamin S., Liu, Zhe, Lavis, Luke D.
Published in JACS Au (24.05.2021)
Published in JACS Au (24.05.2021)
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Journal Article
SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data
Lee, Lindsay, Yu, Hongyu, Jia, Bojing Blair, Jussila, Adam, Zhu, Chenxu, Chen, Jiawen, Xie, Liangqi, Hafner, Antonina, Mishra, Shreya, Wang, Duan Dennis, Strambio-De-Castillia, Caterina, Boettiger, Alistair, Ren, Bing, Li, Yun, Hu, Ming
Published in Nature communications (12.08.2023)
Published in Nature communications (12.08.2023)
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Journal Article
Papillary thyroid microcarcinomas located at the middle part of the middle third of the thyroid gland correlates with the presence of neck metastasis
Xiang, Dapeng, MD, Xie, Liangqi, PhD, Xu, Yuanliang, MD, Li, Zhiyu, MD, Hong, Yurong, MD, Wang, Ping, MD
Published in Surgery (01.03.2015)
Published in Surgery (01.03.2015)
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Journal Article
A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency
Xie, Liangqi, Torigoe, Sharon E, Xiao, Jifang, Mai, Daniel H, Li, Li, Davis, Fred P, Dong, Peng, Marie-Nelly, Herve, Grimm, Jonathan, Lavis, Luke, Darzacq, Xavier, Cattoglio, Claudia, Liu, Zhe, Tjian, Robert
Published in Genes & development (01.09.2017)
Published in Genes & development (01.09.2017)
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Journal Article
Dual Mechanism of Rag Gene Repression by c-Myb during Pre-B Cell Proliferation
Timblin, Greg A., Xie, Liangqi, Tjian, Robert, Schlissel, Mark S.
Published in Molecular and cellular biology (01.06.2017)
Published in Molecular and cellular biology (01.06.2017)
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Journal Article
KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription
Xie, Liangqi, Pelz, Carl, Wang, Wensi, Bashar, Amir, Varlamova, Olga, Shadle, Sean, Impey, Soren
Published in The EMBO journal (20.04.2011)
Published in The EMBO journal (20.04.2011)
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Journal Article
Effect and mechanism of Jinkui Shenqi Pill on preventing neural tube defects in mice based on network pharmacology
Xie, Liangqi, Hu, Min, Gan, Yingying, Ru, Yi, Xiao, Baoguo, Jin, Xiaoming, Ma, Cungen, Chai, Zhi, Fan, Huijie
Published in Journal of ethnopharmacology (15.11.2024)
Published in Journal of ethnopharmacology (15.11.2024)
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Journal Article
An optimal combination of five main monomer components in Wuzi Yanzong Pill that prevents neural tube defects and reduces apoptosis and oxidative stress
Wang, Xinliang, Yang, Chanjuan, Ru, Yi, Xie, Liangqi, Xiao, Baoguo, Jin, Xiaoming, Ma, Cungen, Chai, Zhi, Fan, Huijie
Published in Journal of ethnopharmacology (15.09.2023)
Published in Journal of ethnopharmacology (15.09.2023)
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Journal Article
ecDNA hubs drive cooperative intermolecular oncogene expression
Hung, King L., Yost, Kathryn E., Xie, Liangqi, Shi, Quanming, Helmsauer, Konstantin, Luebeck, Jens, Schöpflin, Robert, Lange, Joshua T., Chamorro González, Rocío, Weiser, Natasha E., Chen, Celine, Valieva, Maria E., Wong, Ivy Tsz-Lo, Wu, Sihan, Dehkordi, Siavash R., Duffy, Connor V., Kraft, Katerina, Tang, Jun, Belk, Julia A., Rose, John C., Corces, M. Ryan, Granja, Jeffrey M., Li, Rui, Rajkumar, Utkrisht, Friedlein, Jordan, Bagchi, Anindya, Satpathy, Ansuman T., Tjian, Robert, Mundlos, Stefan, Bafna, Vineet, Henssen, Anton G., Mischel, Paul S., Liu, Zhe, Chang, Howard Y.
Published in Nature (London) (23.12.2021)
Published in Nature (London) (23.12.2021)
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Journal Article
The evolutionary dynamics of extrachromosomal DNA in human cancers
Lange, Joshua T., Rose, John C., Chen, Celine Y., Pichugin, Yuriy, Xie, Liangqi, Tang, Jun, Hung, King L., Yost, Kathryn E., Shi, Quanming, Erb, Marcella L., Rajkumar, Utkrisht, Wu, Sihan, Taschner-Mandl, Sabine, Bernkopf, Marie, Swanton, Charles, Liu, Zhe, Huang, Weini, Chang, Howard Y., Bafna, Vineet, Henssen, Anton G., Werner, Benjamin, Mischel, Paul S.
Published in Nature genetics (01.10.2022)
Published in Nature genetics (01.10.2022)
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Journal Article
Cohesin prevents cross-domain gene coactivation
Dong, Peng, Zhang, Shu, Gandin, Valentina, Xie, Liangqi, Wang, Lihua, Lemire, Andrew L., Li, Wenhong, Otsuna, Hideo, Kawase, Takashi, Lander, Arthur D., Chang, Howard Y., Liu, Zhe J.
Published in Nature genetics (01.08.2024)
Published in Nature genetics (01.08.2024)
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Journal Article