PGAP: pan-genomes analysis pipeline
Zhao, Yongbing, Wu, Jiayan, Yang, Junhui, Sun, Shixiang, Xiao, Jingfa, Yu, Jun
Published in Bioinformatics (01.02.2012)
Published in Bioinformatics (01.02.2012)
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The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types
Chen, Tingting, Chen, Xu, Zhang, Sisi, Zhu, Junwei, Tang, Bixia, Wang, Anke, Dong, Lili, Zhang, Zhewen, Yu, Caixia, Sun, Yanling, Chi, Lianjiang, Chen, Huanxin, Zhai, Shuang, Sun, Yubin, Lan, Li, Zhang, Xin, Xiao, Jingfa, Bao, Yiming, Wang, Yanqing, Zhang, Zhang, Zhao, Wenming
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Published in Genomics, proteomics & bioinformatics (01.08.2021)
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GSA: Genome Sequence Archive
Wang, Yanqing, Song, Fuhai, Zhu, Junwei, Zhang, Sisi, Yang, Yadong, Chen, Tingting, Tang, Bixia, Dong, Lili, Ding, Nan, Zhang, Qian, Bai, Zhouxian, Dong, Xunong, Chen, Huanxin, Sun, Mingyuan, Zhai, Shuang, Sun, Yubin, Yu, Lei, Lan, Li, Xiao, Jingfa, Fang, Xiangdong, Lei, Hongxing, Zhang, Zhang, Zhao, Wenming
Published in Genomics, proteomics & bioinformatics (01.02.2017)
Published in Genomics, proteomics & bioinformatics (01.02.2017)
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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022
Xue, Yongbiao, Zhang, Zhang, He, Shunmin, Zhang, Guoqing, Li, Yixue, Chen, Runsheng, Zeng, Jingyao, Shang, Yunfei, Bu, Congfan, Zhang, Zhewen, Du, Zhenglin, Qian, Qiheng, Zong, Wenting, Du, Qiang, Zhang, Sisi, Dong, Lili, Wang, Yanqing, Yan, Xing, Yan, Haoteng, Cai, Yusheng, Zhang, Weiqi, Liu, Guanghui, Chen, Xu, Yu, Caixia, Zhu, Junwei, Sun, Yubin, Chen, Qiancheng, Zhang, Xin, Sang, Zhengqi, Wang, Yonggang, Zhao, Yilin, Chen, Huanxin, Lan, Li, Zheng, Xinchang, Chen, Meili, Jing, Wei, Liu, Chang, Wang, Guoliang, Zhao, Wei, Xiong, Zhuang, Li, Rujiao, Liu, Lin, Li, Qianpeng, Luo, Sicheng, Wang, Jiajia, Shi, Yirong, Zhou, Honghong, Yang, Fei, Li, Mengwei, Tian, Dongmei, Teng, Xufei, Song, Shuhui, Zhang, Yang, Xu, Feng, Zhou, Chenfen, Teschendorff, Andrew E, He, Yungang, Yang, Zhen, Li, Lun, Wu, Gangao, Jin, Enhui, Chen, Hua, Xue, Yu, Liu, Xingyan, Zhang, Longlong, Zhang, Shihua, Zhang, Yaping, Wang, Guodong, Li, Xin, Liu, Yuanming, Wu, Xiaoyuan, Jing, Haichun, Pan, Yitong, Shi, Leisheng, Ren, Jian, Li, Xia, Liu, Dan, Zhao, Zheng, Jiang, Tao, Zhao, Fangqing, Peng, Di, Luo, Hao, Gao, Feng, Liu, Chuijie, Su, Tianhan, Zhang, Yong E, Zhou, Yincong, Fu, Shanshan, Zhang, Weizhi, Luo, Mei, Wang, Chenwei, Liao, Xingyu, Xie, Guiyan, Yang, Dechang, Tang, Dachao, Wu, Wenyi, Gou, Yujie, Li, Xiangshang, Li, Chuan-Yun, Luo, XiaoTong
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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PanGP: A tool for quickly analyzing bacterial pan-genome profile
Zhao, Yongbing, Jia, Xinmiao, Yang, Junhui, Ling, Yunchao, Zhang, Zhang, Yu, Jun, Wu, Jiayan, Xiao, Jingfa
Published in Bioinformatics (01.05.2014)
Published in Bioinformatics (01.05.2014)
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Genome Warehouse: A Public Repository Housing Genome-scale Data
Chen, Meili, Ma, Yingke, Wu, Song, Zheng, Xinchang, Kang, Hongen, Sang, Jian, Xu, Xingjian, Hao, Lili, Li, Zhaohua, Gong, Zheng, Xiao, Jingfa, Zhang, Zhang, Zhao, Wenming, Bao, Yiming
Published in Genomics, proteomics & bioinformatics (01.08.2021)
Published in Genomics, proteomics & bioinformatics (01.08.2021)
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A comprehensive evaluation of the potential of three next-generation short-read-based plant pan-genome construction strategies for the identification of novel non-reference sequence
Jiang, Meiye, Chen, Meili, Zeng, Jingyao, Du, Zhenglin, Xiao, Jingfa
Published in Frontiers in plant science (19.03.2024)
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MethBank 3.0: a database of DNA methylomes across a variety of species
Li, Rujiao, Liang, Fang, Li, Mengwei, Zou, Dong, Sun, Shixiang, Zhao, Yongbing, Zhao, Wenming, Bao, Yiming, Xiao, Jingfa, Zhang, Zhang
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Genome Variation Map: a data repository of genome variations in BIG Data Center
Song, Shuhui, Tian, Dongmei, Li, Cuiping, Tang, Bixia, Dong, Lili, Xiao, Jingfa, Bao, Yiming, Zhao, Wenming, He, Hang, Zhang, Zhang
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Transcriptome-wide association studies: recent advances in methods, applications and available databases
Mai, Jialin, Lu, Mingming, Gao, Qianwen, Zeng, Jingyao, Xiao, Jingfa
Published in Communications biology (01.09.2023)
Published in Communications biology (01.09.2023)
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Whole-genome and time-course dual RNA-Seq analyses reveal chronic pathogenicity-related gene dynamics in the ginseng rusty root rot pathogen Ilyonectria robusta
Guan, Yiming, Chen, Meili, Ma, Yingying, Du, Zhenglin, Yuan, Na, Li, Yu, Xiao, Jingfa, Zhang, Yayu
Published in Scientific reports (31.01.2020)
Published in Scientific reports (31.01.2020)
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Database Resources of the BIG Data Center in 2018
Xu, Xingjian, Hao, Lili, Zhu, Junwei, Tang, Bixia, Zhou, Qing, Song, Fuhai, Chen, Tingting, Zhang, Sisi, Dong, Lili, Lan, Li, Wang, Yanqing, Sang, Jian, Liang, Fang, Cao, Jiabao, Liu, Fang, Liu, Lin, Wang, Fan, Ma, Yingke, Zhang, Lijuan, Chen, Meili, Tian, Dongmei, Li, Cuiping, Du, Zhenglin, Yuan, Na, Zeng, Jingyao, Zhang, Zhewen, Wang, Jinyue, Shi, Shuo, Zhang, Yadong, Pan, Mengyu, Zou, Dong, Song, Shuhui, Xia, Lin, Wang, Zhennan, Li, Man, Niu, Guangyi, Zhang, Yang, Sheng, Xin, Lu, Mingming, Wang, Qi, Xiao, Jingfa, Li, Mengwei, Sun, Shixiang, Li, Rujiao, Yu, Chunlei, Wang, Guangyu, Yin, Hongyan, Ma, Lina, Chen, Huanxin, Sun, Yubin, Yu, Lei, Zhai, Shuang, Sun, Mingyuan, Zhang, Zhang, Zhao, Wenming, Bao, Yiming
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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NucMap: a database of genome-wide nucleosome positioning map across species
Zhao, Yongbing, Wang, Jinyue, Liang, Fang, Liu, Yanxia, Wang, Qi, Zhang, Hao, Jiang, Meiye, Zhang, Zhewen, Zhao, Wenming, Bao, Yiming, Zhang, Zhang, Wu, Jiayan, Asmann, Yan W, Li, Rujiao, Xiao, Jingfa
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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A Brief Review of Software Tools for Pangenomics
Xiao, Jingfa, Zhang, Zhewen, Wu, Jiayan, Yu, Jun
Published in Genomics, proteomics & bioinformatics (01.02.2015)
Published in Genomics, proteomics & bioinformatics (01.02.2015)
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The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR
Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chuandong, Li, Rujiao, Zeng, Jingyao, Hao, Lili, Jiang, Shuai, Chen, Hua, Han, Dali, Xiao, Jingfa, Zhang, Zhang, Zhao, Wenming, Xue, Yongbiao, Bao, Yiming
Published in Genomics, proteomics & bioinformatics (01.12.2020)
Published in Genomics, proteomics & bioinformatics (01.12.2020)
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Comparative genomic analysis of Streptococcus suis reveals significant genomic diversity among different serotypes
Zhang, Anding, Yang, Ming, Hu, Pan, Wu, Jiayan, Chen, Bo, Hua, Yafeng, Yu, Jun, Chen, Huanchun, Xiao, Jingfa, Jin, Meilin
Published in BMC genomics (25.10.2011)
Published in BMC genomics (25.10.2011)
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Genome Sequence Analysis of the Naphthenic Acid Degrading and Metal Resistant Bacterium Cupriavidus gilardii CR3
Wang, Xiaoyu, Chen, Meili, Xiao, Jingfa, Hao, Lirui, Crowley, David E, Zhang, Zhewen, Yu, Jun, Huang, Ning, Huo, Mingxin, Wu, Jiayan
Published in PloS one (24.08.2015)
Published in PloS one (24.08.2015)
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Database Commons: A Catalog of Worldwide Biological Databases
Ma, Lina, Zou, Dong, Liu, Lin, Shireen, Huma, Abbasi, Amir A., Bateman, Alex, Xiao, Jingfa, Zhao, Wenming, Bao, Yiming, Zhang, Zhang
Published in Genomics, proteomics & bioinformatics (01.10.2023)
Published in Genomics, proteomics & bioinformatics (01.10.2023)
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