Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data
Liu, Qian, Fang, Li, Yu, Guoliang, Wang, Depeng, Xiao, Chuan-Le, Wang, Kai
Published in Nature communications (04.06.2019)
Published in Nature communications (04.06.2019)
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Efficient assembly of nanopore reads via highly accurate and intact error correction
Chen, Ying, Nie, Fan, Xie, Shang-Qian, Zheng, Ying-Feng, Dai, Qi, Bray, Thomas, Wang, Yao-Xin, Xing, Jian-Feng, Huang, Zhi-Jian, Wang, De-Peng, He, Li-Juan, Luo, Feng, Wang, Jian-Xin, Liu, Yi-Zhi, Xiao, Chuan-Le
Published in Nature communications (04.01.2021)
Published in Nature communications (04.01.2021)
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Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning
Ni, Peng, Huang, Neng, Nie, Fan, Zhang, Jun, Zhang, Zhi, Wu, Bo, Bai, Lu, Liu, Wende, Xiao, Chuan-Le, Luo, Feng, Wang, Jianxin
Published in Nature communications (13.10.2021)
Published in Nature communications (13.10.2021)
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MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
Xiao, Chuan-Le, Chen, Ying, Xie, Shang-Qian, Chen, Kai-Ning, Wang, Yan, Han, Yue, Luo, Feng, Xie, Zhi
Published in Nature methods (01.11.2017)
Published in Nature methods (01.11.2017)
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DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning
Ni, Peng, Huang, Neng, Zhang, Zhi, Wang, De-Peng, Liang, Fan, Miao, Yu, Xiao, Chuan-Le, Luo, Feng, Wang, Jianxin
Published in Bioinformatics (01.11.2019)
Published in Bioinformatics (01.11.2019)
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NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads
Hu, Jiang, Wang, Zhuo, Sun, Zongyi, Hu, Benxia, Ayoola, Adeola Oluwakemi, Liang, Fan, Li, Jingjing, Sandoval, José R, Cooper, David N, Ye, Kai, Ruan, Jue, Xiao, Chuan-Le, Wang, Depeng, Wu, Dong-Dong, Wang, Sheng
Published in Genome Biology (26.04.2024)
Published in Genome Biology (26.04.2024)
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DNA 5-methylcytosine detection and methylation phasing using PacBio circular consensus sequencing
Ni, Peng, Nie, Fan, Zhong, Zeyu, Xu, Jinrui, Huang, Neng, Zhang, Jun, Zhao, Haochen, Zou, You, Huang, Yuanfeng, Li, Jinchen, Xiao, Chuan-Le, Luo, Feng, Wang, Jianxin
Published in Nature communications (08.07.2023)
Published in Nature communications (08.07.2023)
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High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing
Shi, Zhuo-Xing, Chen, Zhi-Chao, Zhong, Jia-Yong, Hu, Kun-Hua, Zheng, Ying-Feng, Chen, Ying, Xie, Shang-Qian, Bo, Xiao-Chen, Luo, Feng, Tang, Chong, Xiao, Chuan-Le, Liu, Yi-Zhi
Published in Nature communications (06.05.2023)
Published in Nature communications (06.05.2023)
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High-throughput Pore-C reveals the single-allele topology and cell type-specificity of 3D genome folding
Zhong, Jia-Yong, Niu, Longjian, Lin, Zhuo-Bin, Bai, Xin, Chen, Ying, Luo, Feng, Hou, Chunhui, Xiao, Chuan-Le
Published in Nature communications (06.03.2023)
Published in Nature communications (06.03.2023)
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MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae
Liu, Zhao-Yu, Xing, Jian-Feng, Chen, Wei, Luan, Mei-Wei, Xie, Rui, Huang, Jing, Xie, Shang-Qian, Xiao, Chuan-Le
Published in Horticulture research (15.06.2019)
Published in Horticulture research (15.06.2019)
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FANSe2: a robust and cost-efficient alignment tool for quantitative next-generation sequencing applications
Xiao, Chuan-Le, Mai, Zhi-Biao, Lian, Xin-Lei, Zhong, Jia-Yong, Jin, Jing-Jie, He, Qing-Yu, Zhang, Gong
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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DNA N6-Methyladenosine modification role in transmitted variations from genomic DNA to RNA in Herrania umbratica
Luan, Mei-Wei, Chen, Wei, Xing, Jian-Feng, Xiao, Chuan-Le, Chen, Ying, Xie, Shang-Qian
Published in BMC genomics (18.06.2019)
Published in BMC genomics (18.06.2019)
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Phosphoproteomic Analysis Reveals the Multiple Roles of Phosphorylation in Pathogenic Bacterium Streptococcus pneumoniae
Sun, Xuesong, Ge, Feng, Xiao, Chuan-Le, Yin, Xing-Feng, Ge, Ruiguang, Zhang, Liu-Hui, He, Qing-Yu
Published in Journal of proteome research (04.01.2010)
Published in Journal of proteome research (04.01.2010)
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Editorial: Biomedical Data Visualization: Methods and Applications
Wu, Tianzhi, Xiao, Chuan-Le, Lam, Tommy Tsan-Yuk, Yu, Guangchuang
Published in Frontiers in genetics (27.04.2022)
Published in Frontiers in genetics (27.04.2022)
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Global phosphoproteomic effects of natural tyrosine kinase inhibitor, genistein, on signaling pathways
Yan, Guang-Rong, Xiao, Chuan-Le, He, Gui-Wei, Yin, Xing-Feng, Chen, Nan-Peng, Cao, Ya, He, Qing-Yu
Published in Proteomics (Weinheim) (01.03.2010)
Published in Proteomics (Weinheim) (01.03.2010)
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CobB regulates Escherichia coli chemotaxis by deacetylating the response regulator CheY
Li, Ru, Gu, Jing, Chen, Yuan-Yuan, Xiao, Chuan-Le, Wang, Li-Wei, Zhang, Zhi-Ping, Bi, Li-Jun, Wei, Hong-Ping, Wang, Xu-De, Deng, Jiao-Yu, Zhang, Xian-En
Published in Molecular microbiology (01.06.2010)
Published in Molecular microbiology (01.06.2010)
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N6-Methyladenine DNA modification in Xanthomonas oryzae pv. oryzicola genome
Xiao, Chuan-Le, Xie, Shang-Qian, Xie, Qing-Biao, Liu, Zhao-Yu, Xing, Jian-Feng, Ji, Kai-Kai, Tao, Jun, Dai, Liang-Ying, Luo, Feng
Published in Scientific reports (02.11.2018)
Published in Scientific reports (02.11.2018)
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Putative copper- and zinc-binding motifs in Streptococcus pneumoniae identified by immobilized metal affinity chromatography and mass spectrometry
Sun, Xuesong, Xiao, Chuan-le, Ge, Ruiguang, Yin, Xingfeng, Li, Hui, Li, Nan, Yang, Xiaoyan, Zhu, Ying, He, Xiang, He, Qing-Yu
Published in Proteomics (Weinheim) (01.08.2011)
Published in Proteomics (Weinheim) (01.08.2011)
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SCSit: A high-efficiency preprocessing tool for single-cell sequencing data from SPLiT-seq
Luan, Mei-Wei, Lin, Jia-Lun, Wang, Ye-Fan, Liu, Yu-Xiao, Xiao, Chuan-Le, Wu, Rongling, Xie, Shang-Qian
Published in Computational and structural biotechnology journal (01.01.2021)
Published in Computational and structural biotechnology journal (01.01.2021)
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