Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations
Xiang, Ruidong, MacLeod, Iona M., Daetwyler, Hans D., de Jong, Gerben, O’Connor, Erin, Schrooten, Chris, Chamberlain, Amanda J., Goddard, Michael E.
Published in Nature communications (08.02.2021)
Published in Nature communications (08.02.2021)
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Journal Article
Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research
Kern, Colin, Wang, Ying, Xu, Xiaoqin, Pan, Zhangyuan, Halstead, Michelle, Chanthavixay, Ganrea, Saelao, Perot, Waters, Susan, Xiang, Ruidong, Chamberlain, Amanda, Korf, Ian, Delany, Mary E., Cheng, Hans H., Medrano, Juan F., Van Eenennaam, Alison L., Tuggle, Chris K., Ernst, Catherine, Flicek, Paul, Quon, Gerald, Ross, Pablo, Zhou, Huaijun
Published in Nature communications (23.03.2021)
Published in Nature communications (23.03.2021)
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Journal Article
New loci and neuronal pathways for resilience to heat stress in cattle
Cheruiyot, Evans K., Haile-Mariam, Mekonnen, Cocks, Benjamin G., MacLeod, Iona M., Xiang, Ruidong, Pryce, Jennie E.
Published in Scientific reports (17.08.2021)
Published in Scientific reports (17.08.2021)
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Journal Article
Poor sleep and shift work associate with increased blood pressure and inflammation in UK Biobank participants
Kanki, Monica, Nath, Artika P., Xiang, Ruidong, Yiallourou, Stephanie, Fuller, Peter J., Cole, Timothy J., Cánovas, Rodrigo, Young, Morag J.
Published in Nature communications (04.11.2023)
Published in Nature communications (04.11.2023)
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Journal Article
Genetic variation in histone modifications and gene expression identifies regulatory variants in the mammary gland of cattle
Prowse-Wilkins, Claire P, Lopdell, Thomas J, Xiang, Ruidong, Vander Jagt, Christy J, Littlejohn, Mathew D, Chamberlain, Amanda J, Goddard, Michael E
Published in BMC genomics (08.12.2022)
Published in BMC genomics (08.12.2022)
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Journal Article
Recent advances in polygenic scores: translation, equitability, methods and FAIR tools
Xiang, Ruidong, Kelemen, Martin, Xu, Yu, Harris, Laura W, Parkinson, Helen, Inouye, Michael, Lambert, Samuel A
Published in Genome medicine (19.02.2024)
Published in Genome medicine (19.02.2024)
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Journal Article
Meta-analysis for milk fat and protein percentage using imputed sequence variant genotypes in 94,321 cattle from eight cattle breeds
van den Berg, Irene, Xiang, Ruidong, Jenko, Janez, Pausch, Hubert, Boussaha, Mekki, Schrooten, Chris, Tribout, Thierry, Gjuvsland, Arne B, Boichard, Didier, Nordbø, Øyvind, Sanchez, Marie-Pierre, Goddard, Mike E
Published in Genetics selection evolution (Paris) (07.07.2020)
Published in Genetics selection evolution (Paris) (07.07.2020)
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Journal Article
Allele-specific binding variants causing ChIP-seq peak height of histone modification are not enriched in expression QTL annotations
Ghoreishifar, Mohammad, Chamberlain, Amanda J, Xiang, Ruidong, Prowse-Wilkins, Claire P, Lopdell, Thomas J, Littlejohn, Mathew D, Pryce, Jennie E, Goddard, Michael E
Published in Genetics selection evolution (Paris) (27.06.2024)
Published in Genetics selection evolution (Paris) (27.06.2024)
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Journal Article
Editorial: Multi-Layered Genome-Wide Association/Prediction in Animals
Xiang, Ruidong, Fang, Lingzhao, Sanchez, Marie-Pierre, Cheng, Hao, Zhang, Zhe
Published in Frontiers in genetics (08.04.2022)
Published in Frontiers in genetics (08.04.2022)
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Journal Article
Analyses of inter-individual variations of sperm DNA methylation and their potential implications in cattle
Liu, Shuli, Fang, Lingzhao, Zhou, Yang, Santos, Daniel J A, Xiang, Ruidong, Daetwyler, Hans D, Chamberlain, Amanda J, Cole, John B, Li, Cong-Jun, Yu, Ying, Ma, Li, Zhang, Shengli, Liu, George E
Published in BMC genomics (21.11.2019)
Published in BMC genomics (21.11.2019)
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Journal Article
Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle
Dorji, Jigme, Vander Jagt, Christy J, Garner, Josie B, Marett, Leah C, Mason, Brett A, Reich, Coralie M, Xiang, Ruidong, Clark, Emily L, Cocks, Benjamin G, Chamberlain, Amanda J, MacLeod, Iona M, Daetwyler, Hans D
Published in BMC genomics (19.10.2020)
Published in BMC genomics (19.10.2020)
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Journal Article
In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants
Nguyen, Tuan V, Vander Jagt, Christy J, Wang, Jianghui, Daetwyler, Hans D, Xiang, Ruidong, Goddard, Michael E, Nguyen, Loan T, Ross, Elizabeth M, Hayes, Ben J, Chamberlain, Amanda J, MacLeod, Iona M
Published in Genetics selection evolution (Paris) (31.01.2023)
Published in Genetics selection evolution (Paris) (31.01.2023)
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Journal Article
Using expression data to fine map QTL associated with fertility in dairy cattle
van den Berg, Irene, Chamberlain, Amanda J, MacLeod, Iona M, Nguyen, Tuan V, Goddard, Mike E, Xiang, Ruidong, Mason, Brett, Meier, Susanne, Phyn, Claire V C, Burke, Chris R, Pryce, Jennie E
Published in Genetics selection evolution (Paris) (06.06.2024)
Published in Genetics selection evolution (Paris) (06.06.2024)
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Journal Article
Correction to: Expression of mitochondrial protein genes encoded by nuclear and mitochondrial genomes correlate with energy metabolism in dairy cattle
Dorji, Jigme, Vander Jagt, Christy J, Garner, Josie B, Marett, Leah C, Mason, Brett A, Reich, Coralie M, Xiang, Ruidong, Clark, Emily L, Cocks, Benjamin G, Chamberlain, Amanda J, MacLeod, Iona M, Daetwyler, Hans D
Published in BMC genomics (20.04.2022)
Published in BMC genomics (20.04.2022)
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Journal Article
Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues
Xiang, Ruidong, Hayes, Ben J, Vander Jagt, Christy J, MacLeod, Iona M, Khansefid, Majid, Bowman, Phil J, Yuan, Zehu, Prowse-Wilkins, Claire P, Reich, Coralie M, Mason, Brett A, Garner, Josie B, Marett, Leah C, Chen, Yizhou, Bolormaa, Sunduimijid, Daetwyler, Hans D, Chamberlain, Amanda J, Goddard, Michael E
Published in BMC genomics (04.07.2018)
Published in BMC genomics (04.07.2018)
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Journal Article
Expression quantitative trait loci in sheep liver and muscle contribute to variations in meat traits
Yuan, Zehu, Sunduimijid, Bolormaa, Xiang, Ruidong, Behrendt, Ralph, Knight, Matthew I, Mason, Brett A, Reich, Coralie M, Prowse-Wilkins, Claire, Vander Jagt, Christy J, Chamberlain, Amanda J, MacLeod, Iona M, Li, Fadi, Yue, Xiangpeng, Daetwyler, Hans D
Published in Genetics selection evolution (Paris) (18.01.2021)
Published in Genetics selection evolution (Paris) (18.01.2021)
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Journal Article
Correction: In it for the long run: perspectives on exploiting long-read sequencing in livestock for population scale studies of structural variants
Nguyen, Tuan V, Vander Jagt, Christy J, Wang, Jianghui, Daetwyler, Hans D, Xiang, Ruidong, Goddard, Michael E, Nguyen, Loan T, Ross, Elizabeth M, Hayes, Ben J, Chamberlain, Amanda J, MacLeod, Iona M
Published in Genetics selection evolution (Paris) (11.04.2023)
Published in Genetics selection evolution (Paris) (11.04.2023)
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