SARS-CoV-2 Genomic Epidemiology Dashboards: A Review of Functionality and Technological Frameworks for the Public Health Response
Sitharam, Nikita, Tegally, Houriiyah, Silva, Danilo de Castro, Baxter, Cheryl, de Oliveira, Tulio, Xavier, Joicymara S
Published in Genes (01.07.2024)
Published in Genes (01.07.2024)
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Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern
Tegally, Houriiyah, Wilkinson, Eduan, Tsui, Joseph L.- H., Moir, Monika, Martin, Darren, Brito, Anderson Fernandes, Giovanetti, Marta, Khan, Kamran, Huber, Carmen, Bogoch, Isaac I., San, James Emmanuel, Poongavanan, Jenicca, Xavier, Joicymara S., Candido, Darlan da S., Romero, Filipe, Baxter, Cheryl, Pybus, Oliver G., Lessells, Richard J., Faria, Nuno R., Kraemer, Moritz U.G., de Oliveira, Tulio
Published in Cell (20.07.2023)
Published in Cell (20.07.2023)
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EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening
Pires, Douglas E V, Veloso, Wandré N P, Myung, YooChan, Rodrigues, Carlos H M, Silk, Michael, Rezende, Pâmela M, Silva, Francislon, Xavier, Joicymara S, Velloso, João P L, da Silveira, Carlos H, Ascher, David B
Published in Bioinformatics (15.08.2020)
Published in Bioinformatics (15.08.2020)
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Journal Article
Managing and assembling population-scale data streams, tools and workflows to plan for future pandemics within the INFORM-Africa Consortium
Poongavanan, Jenicca, Xavier, Joicymara, Dunaiski, Marcel, Tegally, Houriiyah, Oladejo, Sunday O., Ayorinde, Olawole, Wilkinson, Eduan, De Oliveira, Tulio
Published in South African Journal of Science (01.05.2023)
Published in South African Journal of Science (01.05.2023)
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Journal Article
Identifying Genotype-Phenotype Correlations via Integrative Mutation Analysis
Airey, Edward, Portelli, Stephanie, Xavier, Joicymara S, Myung, Yoo Chan, Silk, Michael, Karmakar, Malancha, Velloso, João P L, Rodrigues, Carlos H M, Parate, Hardik H, Garg, Anjali, Al-Jarf, Raghad, Barr, Lucy, Geraldo, Juliana A, Rezende, Pâmela M, Pires, Douglas E V, Ascher, David B
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2021)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2021)
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A Comprehensive Computational Platform to Guide Drug Development Using Graph-Based Signature Methods
Pires, Douglas E V, Portelli, Stephanie, Rezende, Pâmela M, Veloso, Wandré N P, Xavier, Joicymara S, Karmakar, Malancha, Myung, Yoochan, Linhares, João P V, Rodrigues, Carlos H M, Silk, Michael, Ascher, David B
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2020)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2020)
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SARS-CoV-2 Africa dashboard for real-time COVID-19 information
Xavier, Joicymara S, Moir, Monika, Tegally, Houriiyah, Sitharam, Nikita, Abdool Karim, Wasim, San, James E, Linhares, Joana, Wilkinson, Eduan, Ascher, David B, Baxter, Cheryl, Pires, Douglas E V, de Oliveira, Tulio
Published in Nature microbiology (01.01.2023)
Published in Nature microbiology (01.01.2023)
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Insights into SARS-CoV-2 in Angola during the COVID-19 peak: Molecular epidemiology and genome surveillance
Francisco, Ngiambudulu M, van Wyk, Stephanie, Moir, Monika, San, James Emmanuel, Sebastião, Cruz S, Tegally, Houriiyah, Xavier, Joicymara, Maharaj, Akhil, Neto, Zoraima, Afonso, Pedro, Jandondo, Domingos, Paixão, Joana, Miranda, Julio, David, Kumbelembe, Inglês, Luzia, Pereira, Amilton, Paulo, Agostinho, Carralero, Raisa Rivas, Freitas, Helga Reis, Mufinda, Franco, Lutucuta, Silvia, Ghafari, Mahan, Giovanetti, Marta, Giandhari, Jennifer, Pillay, Sureshnee, Naidoo, Yeshnee, Singh, Lavanya, Tshiabuila, Derek, Martin, Darren Patrick, Chabuka, Lucious, Choga, Wonderful, Wanjohi, Dorcas, Mwangi, Sarah, Pillay, Yusasha, Kebede, Yenew, Shumba, Edwin, Ondoa, Pascale, Baxter, Cheryl, Wilkinson, Eduan, Tessema, Sofonias Kifle, Katzourakis, Aris, Lessells, Richard, de Oliveira, Tulio, Morais, Joana
Published in Influenza and other respiratory viruses (01.09.2023)
Published in Influenza and other respiratory viruses (01.09.2023)
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From In-Person to the Online World: Insights Into Organizing Events in Bioinformatics
da Silva, Alessandra Lima, Abreu, Ana Paula de, Mariano, Diego, Caixeta, Felipe, Santos, Fenícia Brito, Lage, Fernanda Stussi D., Quintanilha-Peixoto, Gabriel, Hilário, Heron. O., Xavier, Joicymara. S., Queiroz, Lucio. R., de Toledo, Nayara Evelin, Tavares, Raphael, Kato, Rodrigo Bentes, dos Santos, Roselane Gonçalves, Soares, Stellamaris, Goes, Wanessa. M., Nogueira, Wylerson. G., Batista, Thiago. M., Ortega, José Miguel, De Carvalho, Vasco Ariston Azevedo, Franco, Glória. Regina, Melo-Minardi, Raquel. C. de, Góes-Neto, Aristóteles
Published in Frontiers in bioinformatics (07.09.2021)
Published in Frontiers in bioinformatics (07.09.2021)
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Genomic epidemiology of SARS-CoV-2 during the first four waves in Mozambique
Ismael, Nalia, van Wyk, Stephanie, Tegally, Houriiyah, Giandhari, Jennifer, San, James Emmanuel, Moir, Monika, Pillay, Sureshnee, Utpatel, Christian, Singh, Lavanya, Naidoo, Yeshnee, Ramphal, Upasana, Mabunda, Nédio, Abílio, Nuro, Arnaldo, Paulo, Xavier, Joicymara, Amoako, Daniel Gyamfi, Everatt, Josie, Ramphal, Yajna, Maharaj, Arisha, de Araujo, Leonardo, Anyaneji, Ugochukwu J, Tshiabuila, Derek, Viegas, Sofia, Lessells, Richard, Engelbrecht, Susan, Gudo, Eduardo, Jani, Ilesh, Niemann, Stefan, Wilkinson, Eduan, de Oliveira, Túlio
Published in PLOS global public health (2023)
Published in PLOS global public health (2023)
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Innovative infrastructure to access Brazilian fungal diversity using deep learning
Chaves, Thiago, Santos Xavier, Joicymara, Gonçalves dos Santos, Alfeu, Martins-Cunha, Kelmer, Karstedt, Fernanda, Kossmann, Thiago, Sourell, Susanne, Leopoldo, Eloisa, Fortuna Ferreira, Miriam Nathalie, Farias, Roger, Titton, Mahatmã, Alves-Silva, Genivaldo, Bittencourt, Felipe, Bortolini, Dener, Gumboski, Emerson L., von Wangenheim, Aldo, Góes-Neto, Aristóteles, Drechsler-Santos, Elisandro Ricardo
Published in PeerJ (San Francisco, CA) (09.07.2024)
Published in PeerJ (San Francisco, CA) (09.07.2024)
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Journal Article
Global Expansion of SARS-CoV-2 Variants of Concern: Dispersal Patterns and Influence of Air Travel
Tegally, Houriiyah, Wilkinson, Eduan, Martin, Darren, Moir, Monika, Brito, Anderson, Giovanetti, Marta, Khan, Kamran, Huber, Carmen, Bogoch, Isaac I, San, James Emmanuel, Tsui, Joseph L-H, Poongavanan, Jenicca, Xavier, Joicymara S, Candido, Darlan da S, Romero, Filipe, Baxter, Cheryl, Pybus, Oliver G, Lessells, Richard, Faria, Nuno R, Kraemer, Moritz U G, de Oliveira, Tulio
Published in medRxiv : the preprint server for health sciences (27.11.2022)
Published in medRxiv : the preprint server for health sciences (27.11.2022)
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Exploring Protein Supersecondary Structure Through Changes in Protein Folding, Stability, and Flexibility
Pires, Douglas E V, Rodrigues, Carlos H M, Albanaz, Amanda T S, Karmakar, Malancha, Myung, Yoochan, Xavier, Joicymara, Michanetzi, Eleni-Maria, Portelli, Stephanie, Ascher, David B
Published in Methods in molecular biology (Clifton, N.J.) (2019)
Published in Methods in molecular biology (Clifton, N.J.) (2019)
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Journal Article
Genomic epidemiology of SARS-CoV-2 during the first four waves in Mozambique
Nalia Ismael, Stephanie van Wyk, Houriiyah Tegally, Jennifer Giandhari, James Emmanuel San, Monika Moir, Sureshnee Pillay, Christian Utpatel, Lavanya Singh, Yeshnee Naidoo, Upasana Ramphal, Nédio Mabunda, Nuro Abílio, Paulo Arnaldo, Joicymara Xavier, Daniel Gyamfi Amoako, Josie Everatt, Yajna Ramphal, Arisha Maharaj, Leonardo de Araujo, Ugochukwu J Anyaneji, Derek Tshiabuila, Sofia Viegas, Richard Lessells, Susan Engelbrecht, Eduardo Gudo, Ilesh Jani, Stefan Niemann, Eduan Wilkinson, Túlio de Oliveira
Published in PLOS global public health (01.01.2023)
Published in PLOS global public health (01.01.2023)
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