SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach
Wang, Mingyi, Luo, Wen, Jones, Kristine, Bian, Xiaopeng, Williams, Russell, Higson, Herbert, Wu, Dongjing, Hicks, Belynda, Yeager, Meredith, Zhu, Bin
Published in Scientific reports (30.07.2020)
Published in Scientific reports (30.07.2020)
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Journal Article
A new purification method for Ni and Cu stable isotopes in seawater provides evidence for widespread Ni isotope fractionation by phytoplankton in the North Pacific
Yang, Shun-Chung, Hawco, Nicholas J., Pinedo-González, Paulina, Bian, Xiaopeng, Huang, Kuo-Fang, Zhang, Ruifeng, John, Seth G.
Published in Chemical geology (05.08.2020)
Published in Chemical geology (05.08.2020)
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Journal Article
Comparing the performance of selected variant callers using synthetic data and genome segmentation
Bian, Xiaopeng, Zhu, Bin, Wang, Mingyi, Hu, Ying, Chen, Qingrong, Nguyen, Cu, Hicks, Belynda, Meerzaman, Daoud
Published in BMC bioinformatics (19.11.2018)
Published in BMC bioinformatics (19.11.2018)
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Journal Article
Lack of redox cycling for nickel in the water column of the Eastern tropical north pacific oxygen deficient zone: Insight from dissolved and particulate nickel isotopes
Yang, Shun-Chung, Kelly, Rachel L., Bian, Xiaopeng, Conway, Tim M., Huang, Kuo-Fang, Ho, Tung-Yuan, Neibauer, Jacquelyn A., Keil, Richard G., Moffett, James W., John, Seth G.
Published in Geochimica et cosmochimica acta (15.09.2021)
Published in Geochimica et cosmochimica acta (15.09.2021)
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Journal Article
Proteomics analysis reveals differential acclimation of coastal and oceanic Synechococcus to climate warming and iron limitation
Schiksnis, Cara, Xu, Min, Saito, Mak A, McIlvin, Matthew, Moran, Dawn, Bian, Xiaopeng, John, Seth G, Zheng, Qiang, Yang, Nina, Fu, Feixue, Hutchins, David A
Published in Frontiers in microbiology (20.02.2024)
Published in Frontiers in microbiology (20.02.2024)
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Journal Article
An effective method to distinguish between artificial and authigenic gypsum in marine sediments
Liu, Chenhui, Jiang, Shao-Yong, Su, Xin, Huang, Chi-Yue, Zhou, Yang, Bian, Xiaopeng, Yang, Tao
Published in Marine and petroleum geology (01.12.2019)
Published in Marine and petroleum geology (01.12.2019)
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Journal Article
Iron species and sulfur isotopic compositions of authigenic pyrite in deep-sea sediments at southern Hydrate Ridge, Cascadia margin (ODP Leg 204): implications for non-steady-state depositional and diagenetic processes
Liu, Chenhui, Jiang, Shao-Yong, Su, Xin, Bian, Xiaopeng, Ding, Hai, Li, Da, Yang, Tao
Published in Frontiers in Marine Science (24.07.2024)
Published in Frontiers in Marine Science (24.07.2024)
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Journal Article
Multi-omics Pathways Workflow (MOPAW): An Automated Multi-omics Workflow on the Cancer Genomics Cloud
Nguyen, Trinh, Bian, Xiaopeng, Roberson, David, Khanna, Rakesh, Chen, Qingrong, Yan, Chunhua, Beck, Rowan, Worman, Zelia, Meerzaman, Daoud
Published in Cancer informatics (01.01.2023)
Published in Cancer informatics (01.01.2023)
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Journal Article
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)
Kinsinger, Christopher R., Apffel, James, Baker, Mark, Bian, Xiaopeng, Borchers, Christoph H., Bradshaw, Ralph, Brusniak, Mi-Youn, Chan, Daniel W., Deutsch, Eric W., Domon, Bruno, Gorman, Jeff, Grimm, Rudolf, Hancock, William, Hermjakob, Henning, Horn, David, Hunter, Christie, Kolar, Patrik, Kraus, Hans-Joachim, Langen, Hanno, Linding, Rune, Moritz, Robert L., Omenn, Gilbert S., Orlando, Ron, Pandey, Akhilesh, Ping, Peipei, Rahbar, Amir, Rivers, Robert, Seymour, Sean L., Simpson, Richard J., Slotta, Douglas, Smith, Richard D., Stein, Stephen E., Tabb, David L., Tagle, Danilo, Yates, John R., Rodriguez, Henry
Published in Proteomics (01.01.2012)
Published in Proteomics (01.01.2012)
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Journal Article
Conference Proceeding
Expression Signature Developed from a Complex Series of Mouse Models Accurately Predicts Human Breast Cancer Survival
MEI HE, MANGIAMELI, David P, KACHALA, Stefan, HUNTER, Kent, GILLESPIE, John, XIAOPENG BIAN, SHEN, H.-C. Jennifer, LIBUTTI, Steven K
Published in Clinical cancer research (01.01.2010)
Published in Clinical cancer research (01.01.2010)
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Journal Article
Alview: Portable Software for Viewing Sequence Reads in BAM Formatted Files
Finney, Richard P., Chen, Qing-Rong, Nguyen, Cu V., Hsu, Chih Hao, Yan, Chunhua, Hu, Ying, Abawi, Massih, Bian, Xiaopeng, Meerzaman, Daoud M.
Published in Cancer Informatics (01.01.2015)
Published in Cancer Informatics (01.01.2015)
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Journal Article
Book Review
Dissection of the sets of genes that control the behavior of biglycan-deficient pre-osteoblasts using oligonucleotide microarrays
Chen, Xiao-Dong, Bian, Xiaopeng, Teslovich, Tanya M., Stephan, Dietrich A., Young, Marian F.
Published in Bone (New York, N.Y.) (01.08.2005)
Published in Bone (New York, N.Y.) (01.08.2005)
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Journal Article
Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles)
Kinsinger, Christopher R., Apffel, James, Baker, Mark, Bian, Xiaopeng, Borchers, Christoph H., Bradshaw, Ralph, Brusniak, Mi-Youn, Chan, Daniel W., Deutsch, Eric W., Domon, Bruno, Gorman, Jeff, Grimm, Rudolf, Hancock, William, Hermjakob, Henning, Horn, David, Hunter, Christie, Kolar, Patrik, Kraus, Hans-Joachim, Langen, Hanno, Linding, Rune, Moritz, Robert L., Omenn, Gilbert S., Orlando, Ron, Pandey, Akhilesh, Ping, Peipei, Rahbar, Amir, Rivers, Robert, Seymour, Sean L., Simpson, Richard J., Slotta, Douglas, Smith, Richard D., Stein, Stephen E., Tabb, David L., Tagle, Danilo, Yates III, John R., Rodriguez, Henry
Published in Proteomics. Clinical applications (01.12.2011)
Published in Proteomics. Clinical applications (01.12.2011)
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Journal Article
Conference Proceeding
Zinc isotope composition of the Proterozoic clastic-dominated McArthur River Zn-Pb-Ag deposit, northern Australia
Baumgartner, Raphael J., Kunzmann, Marcus, Spinks, Sam, Bian, Xiaopeng, John, Seth G., Blaikie, Teagan N., Hu, Siyu
Published in Ore geology reviews (01.12.2021)
Published in Ore geology reviews (01.12.2021)
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Journal Article
Actinium and radium fluxes from the seabed in the northeast Pacific Basin
Kemnitz, Nathaniel, Hammond, Douglas E., Henderson, Paul, Le Roy, Emilie, Charette, Matthew, Moore, Willard, Anderson, Robert F., Fleisher, Martin Q., Leal, Anne, Black, Erin, Hayes, Christopher T., Adkins, Jess, Berelson, William, Bian, Xiaopeng
Published in Marine chemistry (20.03.2023)
Published in Marine chemistry (20.03.2023)
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Journal Article
The biogeochemical balance of oceanic nickel cycling
John, Seth G., Kelly, Rachel L., Bian, Xiaopeng, Fu, Feixue, Smith, M. Isabel, Lanning, Nathan T., Liang, Hengdi, Pasquier, Benoît, Seelen, Emily A., Holzer, Mark, Wasylenki, Laura, Conway, Tim M., Fitzsimmons, Jessica N., Hutchins, David A., Yang, Shun-Chung
Published in Nature geoscience (01.11.2022)
Published in Nature geoscience (01.11.2022)
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Journal Article
Metal isotope signatures from lava-seawater interaction during the 2018 eruption of Kīlauea
Hawco, Nicholas J., Yang, Shun-Chung, Foreman, Rhea K., Funkey, Carolina P., Dugenne, Mathilde, White, Angelicque E., Wilson, Samuel T., Kelly, Rachel L., Bian, Xiaopeng, Huang, Kuo-Fang, Karl, David M., John, Seth G.
Published in Geochimica et cosmochimica acta (01.08.2020)
Published in Geochimica et cosmochimica acta (01.08.2020)
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