UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View
Boutet, Emmanuel, Lieberherr, Damien, Tognolli, Michael, Schneider, Michel, Bansal, Parit, Bridge, Alan J, Poux, Sylvain, Bougueleret, Lydie, Xenarios, Ioannis
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2016)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2016)
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Journal Article
The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data
Jungo, Florence, Bougueleret, Lydie, Xenarios, Ioannis, Poux, Sylvain
Published in Toxicon (Oxford) (15.09.2012)
Published in Toxicon (Oxford) (15.09.2012)
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Journal Article
Conference Proceeding
Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes
Chong, Chloe, Müller, Markus, Pak, HuiSong, Harnett, Dermot, Huber, Florian, Grun, Delphine, Leleu, Marion, Auger, Aymeric, Arnaud, Marion, Stevenson, Brian J, Michaux, Justine, Bilic, Ilija, Hirsekorn, Antje, Calviello, Lorenzo, Simó-Riudalbas, Laia, Planet, Evarist, Lubiński, Jan, Bryśkiewicz, Marta, Wiznerowicz, Maciej, Xenarios, Ioannis, Zhang, Lin, Trono, Didier, Harari, Alexandre, Ohler, Uwe, Coukos, George, Bassani-Sternberg, Michal
Published in Nature communications (10.03.2020)
Published in Nature communications (10.03.2020)
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Journal Article
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Vizcaíno, Juan A, Deutsch, Eric W, Wang, Rui, Csordas, Attila, Reisinger, Florian, Ríos, Daniel, Dianes, José A, Sun, Zhi, Farrah, Terry, Bandeira, Nuno, Binz, Pierre-Alain, Xenarios, Ioannis, Eisenacher, Martin, Mayer, Gerhard, Gatto, Laurent, Campos, Alex, Chalkley, Robert J, Kraus, Hans-Joachim, Albar, Juan Pablo, Martinez-Bartolomé, Salvador, Apweiler, Rolf, Omenn, Gilbert S, Martens, Lennart, Jones, Andrew R, Hermjakob, Henning
Published in Nature biotechnology (01.03.2014)
Published in Nature biotechnology (01.03.2014)
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Journal Article
Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity
Rodius, Sophie, de Klein, Niek, Jeanty, Céline, Sánchez-Iranzo, Héctor, Crespo, Isaac, Ibberson, Mark, Xenarios, Ioannis, Dittmar, Gunnar, Mercader, Nadia, Niclou, Simone P, Azuaje, Francisco
Published in Scientific reports (19.02.2020)
Published in Scientific reports (19.02.2020)
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Journal Article
Sleep–wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex
Hor, Charlotte N., Yeung, Jake, Jan, Maxime, Emmenegger, Yann, Hubbard, Jeffrey, Xenarios, Ioannis, Naef, Felix, Franken, Paul
Published in Proceedings of the National Academy of Sciences - PNAS (17.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (17.12.2019)
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Journal Article
Neutrophils and Snail Orchestrate the Establishment of a Pro-tumor Microenvironment in Lung Cancer
Faget, Julien, Groeneveld, Svenja, Boivin, Gael, Sankar, Martial, Zangger, Nadine, Garcia, Miguel, Guex, Nicolas, Zlobec, Inti, Steiner, Loïc, Piersigilli, Alessandra, Xenarios, Ioannis, Meylan, Etienne
Published in Cell reports (Cambridge) (12.12.2017)
Published in Cell reports (Cambridge) (12.12.2017)
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Journal Article
Improving population scale statistical phasing with whole-genome sequencing data
Wertenbroek, Rick, Hofmeister, Robin J, Xenarios, Ioannis, Thoma, Yann, Delaneau, Olivier
Published in PLoS genetics (03.07.2024)
Published in PLoS genetics (03.07.2024)
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Journal Article
Towards mouse genetic-specific RNA-sequencing read mapping
Gobet, Nastassia, Jan, Maxime, Franken, Paul, Xenarios, Ioannis
Published in PLoS computational biology (01.09.2022)
Published in PLoS computational biology (01.09.2022)
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Journal Article
Enzyme annotation in UniProtKB using Rhea
Morgat, Anne, Lombardot, Thierry, Coudert, Elisabeth, Axelsen, Kristian, Neto, Teresa Batista, Gehant, Sebastien, Bansal, Parit, Bolleman, Jerven, Gasteiger, Elisabeth, de Castro, Edouard, Baratin, Delphine, Pozzato, Monica, Xenarios, Ioannis, Poux, Sylvain, Redaschi, Nicole, Bridge, Alan
Published in Bioinformatics (01.03.2020)
Published in Bioinformatics (01.03.2020)
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Journal Article
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling
Hornitschek, Patricia, Kohnen, Markus V, Lorrain, Séverine, Rougemont, Jacques, Ljung, Karin, López‐Vidriero, Irene, Franco‐Zorrilla, José M, Solano, Roberto, Trevisan, Martine, Pradervand, Sylvain, Xenarios, Ioannis, Fankhauser, Christian
Published in The Plant journal : for cell and molecular biology (01.09.2012)
Published in The Plant journal : for cell and molecular biology (01.09.2012)
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Journal Article
Synchronous versus asynchronous modeling of gene regulatory networks
Garg, Abhishek, Di Cara, Alessandro, Xenarios, Ioannis, Mendoza, Luis, De Micheli, Giovanni
Published in Bioinformatics (01.09.2008)
Published in Bioinformatics (01.09.2008)
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Journal Article
Plasma Dihydroceramides Are Diabetes Susceptibility Biomarker Candidates in Mice and Humans
Wigger, Leonore, Cruciani-Guglielmacci, Céline, Nicolas, Anthony, Denom, Jessica, Fernandez, Neïké, Fumeron, Frédéric, Marques-Vidal, Pedro, Ktorza, Alain, Kramer, Werner, Schulte, Anke, Le Stunff, Hervé, Liechti, Robin, Xenarios, Ioannis, Vollenweider, Peter, Waeber, Gérard, Uphues, Ingo, Roussel, Ronan, Magnan, Christophe, Ibberson, Mark, Thorens, Bernard
Published in Cell reports (Cambridge) (28.02.2017)
Published in Cell reports (Cambridge) (28.02.2017)
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Journal Article
Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome
Mylonas, Roman, Beer, Ilan, Iseli, Christian, Chong, Chloe, Pak, Hui-Song, Gfeller, David, Coukos, George, Xenarios, Ioannis, Müller, Markus, Bassani-Sternberg, Michal
Published in Molecular & cellular proteomics (01.12.2018)
Published in Molecular & cellular proteomics (01.12.2018)
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Journal Article
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
Orchard, Sandra, Kerrien, Samuel, Abbani, Sara, Aranda, Bruno, Bhate, Jignesh, Bidwell, Shelby, Bridge, Alan, Briganti, Leonardo, Brinkman, Fiona S L, Brinkman, Fiona, Cesareni, Gianni, Chatr-aryamontri, Andrew, Chautard, Emilie, Chen, Carol, Dumousseau, Marine, Goll, Johannes, Hancock, Robert E W, Hancock, Robert, Hannick, Linda I, Jurisica, Igor, Khadake, Jyoti, Lynn, David J, Mahadevan, Usha, Perfetto, Livia, Raghunath, Arathi, Ricard-Blum, Sylvie, Roechert, Bernd, Salwinski, Lukasz, Stümpflen, Volker, Tyers, Mike, Uetz, Peter, Xenarios, Ioannis, Hermjakob, Henning
Published in Nature methods (01.04.2012)
Published in Nature methods (01.04.2012)
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Journal Article
Sensitive and frequent identification of high avidity neo-epitope specific CD8 + T cells in immunotherapy-naive ovarian cancer
Bobisse, Sara, Genolet, Raphael, Roberti, Annalisa, Tanyi, Janos L, Racle, Julien, Stevenson, Brian J, Iseli, Christian, Michel, Alexandra, Le Bitoux, Marie-Aude, Guillaume, Philippe, Schmidt, Julien, Bianchi, Valentina, Dangaj, Denarda, Fenwick, Craig, Derré, Laurent, Xenarios, Ioannis, Michielin, Olivier, Romero, Pedro, Monos, Dimitri S, Zoete, Vincent, Gfeller, David, Kandalaft, Lana E, Coukos, George, Harari, Alexandre
Published in Nature communications (15.03.2018)
Published in Nature communications (15.03.2018)
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Journal Article
Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs
Deforges, Jules, Reis, Rodrigo S, Jacquet, Philippe, Sheppard, Shaoline, Gadekar, Veerendra P, Hart-Smith, Gene, Tanzer, Andrea, Hofacker, Ivo L, Iseli, Christian, Xenarios, Ioannis, Poirier, Yves
Published in Plant physiology (Bethesda) (01.05.2019)
Published in Plant physiology (Bethesda) (01.05.2019)
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Journal Article
The SwissLipids knowledgebase for lipid biology
Aimo, Lucila, Liechti, Robin, Hyka-Nouspikel, Nevila, Niknejad, Anne, Gleizes, Anne, Götz, Lou, Kuznetsov, Dmitry, David, Fabrice P A, van der Goot, F Gisou, Riezman, Howard, Bougueleret, Lydie, Xenarios, Ioannis, Bridge, Alan
Published in Bioinformatics (01.09.2015)
Published in Bioinformatics (01.09.2015)
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Journal Article