Gut microbiota and IBD: causation or correlation?
Ni, Josephine, Wu, Gary D, Albenberg, Lindsey, Tomov, Vesselin T
Published in Nature reviews. Gastroenterology & hepatology (01.10.2017)
Published in Nature reviews. Gastroenterology & hepatology (01.10.2017)
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Diet in the Pathogenesis and Treatment of Inflammatory Bowel Diseases
Lee, Dale, Albenberg, Lindsey, Compher, Charlene, Baldassano, Robert, Piccoli, David, Lewis, James D, Wu, Gary D
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2015)
Published in Gastroenterology (New York, N.Y. 1943) (01.05.2015)
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Rapid evolution of the human gut virome
Minot, Samuel, Bryson, Alexandra, Chehoud, Christel, Wu, Gary D., Lewis, James D., Bushman, Frederic D.
Published in Proceedings of the National Academy of Sciences - PNAS (23.07.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (23.07.2013)
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Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
Lewis, James D., Chen, Eric Z., Baldassano, Robert N., Otley, Anthony R., Griffiths, Anne M., Lee, Dale, Bittinger, Kyle, Bailey, Aubrey, Friedman, Elliot S., Hoffmann, Christian, Albenberg, Lindsey, Sinha, Rohini, Compher, Charlene, Gilroy, Erin, Nessel, Lisa, Grant, Amy, Chehoud, Christel, Li, Hongzhe, Wu, Gary D., Bushman, Frederic D.
Published in Cell host & microbe (14.10.2015)
Published in Cell host & microbe (14.10.2015)
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The structure and function of the human small intestinal microbiota: Current understanding and future directions
Kastl, Arthur J., MD, Terry, Natalie A., MD PhD, Albenberg, Lindsey G., DO, Wu, Gary D., MD
Published in Cellular and molecular gastroenterology and hepatology (01.01.2020)
Published in Cellular and molecular gastroenterology and hepatology (01.01.2020)
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Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents
Hoffmann, Christian, Dollive, Serena, Grunberg, Stephanie, Chen, Jun, Li, Hongzhe, Wu, Gary D, Lewis, James D, Bushman, Frederic D
Published in PloS one (17.06.2013)
Published in PloS one (17.06.2013)
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Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome
Chassaing, Benoit, Compher, Charlene, Bonhomme, Brittaney, Liu, Qing, Tian, Yuan, Walters, William, Nessel, Lisa, Delaroque, Clara, Hao, Fuhua, Gershuni, Victoria, Chau, Lillian, Ni, Josephine, Bewtra, Meenakshi, Albenberg, Lindsey, Bretin, Alexis, McKeever, Liam, Ley, Ruth E., Patterson, Andrew D., Wu, Gary D., Gewirtz, Andrew T., Lewis, James D.
Published in Gastroenterology (New York, N.Y. 1943) (01.03.2022)
Published in Gastroenterology (New York, N.Y. 1943) (01.03.2022)
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Role of dietary fiber in the recovery of the human gut microbiome and its metabolome
Tanes, Ceylan, Bittinger, Kyle, Gao, Yuan, Friedman, Elliot S., Nessel, Lisa, Roy Paladhi, Unmesha, Chau, Lillian, Panfen, Erika, Fischbach, Michael A., Braun, Jonathan, Xavier, Ramnik J., Clish, Clary B., Li, Hongzhe, Bushman, Frederic D., Lewis, James D., Wu, Gary D.
Published in Cell host & microbe (10.03.2021)
Published in Cell host & microbe (10.03.2021)
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Journal Article
Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota
Albenberg, Lindsey, Esipova, Tatiana V, Judge, Colleen P, Bittinger, Kyle, Chen, Jun, Laughlin, Alice, Grunberg, Stephanie, Baldassano, Robert N, Lewis, James D, Li, Hongzhe, Thom, Stephen R, Bushman, Frederic D, Vinogradov, Sergei A, Wu, Gary D
Published in Gastroenterology (New York, N.Y. 1943) (01.11.2014)
Published in Gastroenterology (New York, N.Y. 1943) (01.11.2014)
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Journal Article
The human gut virome: inter-individual variation and dynamic response to diet
Minot, Samuel, Sinha, Rohini, Chen, Jun, Li, Hongzhe, Keilbaugh, Sue A, Wu, Gary D, Lewis, James D, Bushman, Frederic D
Published in Genome research (01.10.2011)
Published in Genome research (01.10.2011)
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Journal Article
Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment
Dollive, Serena, Chen, Ying-Yu, Grunberg, Stephanie, Bittinger, Kyle, Hoffmann, Christian, Vandivier, Lee, Cuff, Christopher, Lewis, James D, Wu, Gary D, Bushman, Frederic D
Published in PloS one (19.08.2013)
Published in PloS one (19.08.2013)
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The stepwise assembly of the neonatal virome is modulated by breastfeeding
Liang, Guanxiang, Zhao, Chunyu, Zhang, Huanjia, Mattei, Lisa, Sherrill-Mix, Scott, Bittinger, Kyle, Kessler, Lyanna R, Wu, Gary D, Baldassano, Robert N, DeRusso, Patricia, Ford, Eileen, Elovitz, Michal A, Kelly, Matthew S, Patel, Mohamed Z, Mazhani, Tiny, Gerber, Jeffrey S, Kelly, Andrea, Zemel, Babette S, Bushman, Frederic D
Published in Nature (London) (01.05.2020)
Published in Nature (London) (01.05.2020)
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Journal Article
Microbes vs. chemistry in the origin of the anaerobic gut lumen
Friedman, Elliot S., Bittinger, Kyle, Esipova, Tatiana V., Hou, Likai, Chau, Lillian, Jiang, Jack, Mesaros, Clementina, Lund, Peder J., Liang, Xue, FitzGerald, Garret A., Goulian, Mark, Lee, Daeyeon, Garcia, Benjamin A., Blair, Ian A., Vinogradov, Sergei A., Wu, Gary D.
Published in Proceedings of the National Academy of Sciences - PNAS (17.04.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (17.04.2018)
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Journal Article
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
Koeth, Robert A, Wang, Zeneng, Levison, Bruce S, Buffa, Jennifer A, Org, Elin, Sheehy, Brendan T, Britt, Earl B, Fu, Xiaoming, Wu, Yuping, Li, Lin, Smith, Jonathan D, DiDonato, Joseph A, Chen, Jun, Li, Hongzhe, Wu, Gary D, Lewis, James D, Warrier, Manya, Brown, J Mark, Krauss, Ronald M, Tang, W H Wilson, Bushman, Frederic D, Lusis, Aldons J, Hazen, Stanley L
Published in Nature medicine (01.05.2013)
Published in Nature medicine (01.05.2013)
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Journal Article
High-fat diet determines the composition of the murine gut microbiome independently of obesity
Hildebrandt, Marie A, Hoffmann, Christian, Sherrill-Mix, Scott A, Keilbaugh, Sue A, Hamady, Micah, Chen, Ying-Yu, Knight, Rob, Ahima, Rexford S, Bushman, Frederic, Wu, Gary D
Published in Gastroenterology (New York, N.Y. 1943) (01.11.2009)
Published in Gastroenterology (New York, N.Y. 1943) (01.11.2009)
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Hypervariable loci in the human gut virome
Minot, Samuel, Grunberg, Stephanie, Wu, Gary D, Lewis, James D, Bushman, Frederic D
Published in Proceedings of the National Academy of Sciences - PNAS (06.03.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (06.03.2012)
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Journal Article
A role for bacterial urease in gut dysbiosis and Crohn's disease
Ni, Josephine, Shen, Ting-Chin David, Chen, Eric Z, Bittinger, Kyle, Bailey, Aubrey, Roggiani, Manuela, Sirota-Madi, Alexandra, Friedman, Elliot S, Chau, Lillian, Lin, Andrew, Nissim, Ilana, Scott, Justin, Lauder, Abigail, Hoffmann, Christopher, Rivas, Gloriany, Albenberg, Lindsey, Baldassano, Robert N, Braun, Jonathan, Xavier, Ramnik J, Clish, Clary B, Yudkoff, Marc, Li, Hongzhe, Goulian, Mark, Bushman, Frederic D, Lewis, James D, Wu, Gary D
Published in Science translational medicine (15.11.2017)
Published in Science translational medicine (15.11.2017)
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Journal Article
Penn Healthy Diet survey: pilot validation and scoring
Compher, Charlene W., Quinn, Ryan, Haslam, Richard, Bader, Elizabeth, Weaver, Joellen, Dudek, Scott, Ritchie, Marylyn D., Lewis, James D., Wu, Gary D.
Published in British journal of nutrition (14.01.2024)
Published in British journal of nutrition (14.01.2024)
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