Protein Bioinformatics Databases and Resources
Chen, Chuming, Huang, Hongzhan, Wu, Cathy H
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2017)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2017)
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Journal Article
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
Suzek, Baris E, Wang, Yuqi, Huang, Hongzhan, McGarvey, Peter B, Wu, Cathy H
Published in Bioinformatics (15.03.2015)
Published in Bioinformatics (15.03.2015)
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A crowdsourcing open platform for literature curation in UniProt
Wang, Yuqi, Wang, Qinghua, Huang, Hongzhan, Huang, Wei, Chen, Yongxing, McGarvey, Peter B, Wu, Cathy H, Arighi, Cecilia N
Published in PLoS biology (06.12.2021)
Published in PLoS biology (06.12.2021)
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Flow: A Modular Learning Framework for Mixed Autonomy Traffic
Wu, Cathy, Kreidieh, Abdul Rahman, Parvate, Kanaad, Vinitsky, Eugene, Bayen, Alexandre M.
Published in IEEE transactions on robotics (01.04.2022)
Published in IEEE transactions on robotics (01.04.2022)
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UniRef: comprehensive and non-redundant UniProt reference clusters
Suzek, Baris E., Huang, Hongzhan, McGarvey, Peter, Mazumder, Raja, Wu, Cathy H.
Published in Bioinformatics (15.05.2007)
Published in Bioinformatics (15.05.2007)
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iPTMnet: an integrated resource for protein post-translational modification network discovery
Huang, Hongzhan, Arighi, Cecilia N, Ross, Karen E, Ren, Jia, Li, Gang, Chen, Sheng-Chih, Wang, Qinghua, Cowart, Julie, Vijay-Shanker, K, Wu, Cathy H
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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InterPro in 2017-beyond protein family and domain annotations
Finn, Robert D, Attwood, Teresa K, Babbitt, Patricia C, Bateman, Alex, Bork, Peer, Bridge, Alan J, Chang, Hsin-Yu, Dosztányi, Zsuzsanna, El-Gebali, Sara, Fraser, Matthew, Gough, Julian, Haft, David, Holliday, Gemma L, Huang, Hongzhan, Huang, Xiaosong, Letunic, Ivica, Lopez, Rodrigo, Lu, Shennan, Marchler-Bauer, Aron, Mi, Huaiyu, Mistry, Jaina, Natale, Darren A, Necci, Marco, Nuka, Gift, Orengo, Christine A, Park, Youngmi, Pesseat, Sebastien, Piovesan, Damiano, Potter, Simon C, Rawlings, Neil D, Redaschi, Nicole, Richardson, Lorna, Rivoire, Catherine, Sangrador-Vegas, Amaia, Sigrist, Christian, Sillitoe, Ian, Smithers, Ben, Squizzato, Silvano, Sutton, Granger, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Xenarios, Ioannis, Yeh, Lai-Su, Young, Siew-Yit, Mitchell, Alex L
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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RNA-Seq Analysis of Abdominal Fat in Genetically Fat and Lean Chickens Highlights a Divergence in Expression of Genes Controlling Adiposity, Hemostasis, and Lipid Metabolism
Resnyk, Christopher W, Chen, Chuming, Huang, Hongzhan, Wu, Cathy H, Simon, Jean, Le Bihan-Duval, Elisabeth, Duclos, Michel J, Cogburn, Larry A
Published in PloS one (07.10.2015)
Published in PloS one (07.10.2015)
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miRTex: A Text Mining System for miRNA-Gene Relation Extraction
Li, Gang, Ross, Karen E, Arighi, Cecilia N, Peng, Yifan, Wu, Cathy H, Vijay-Shanker, K
Published in PLoS computational biology (2015)
Published in PLoS computational biology (2015)
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Software for pre-processing Illumina next-generation sequencing short read sequences
Chen, Chuming, Khaleel, Sari S, Huang, Hongzhan, Wu, Cathy H
Published in Source code for biology and medicine (03.05.2014)
Published in Source code for biology and medicine (03.05.2014)
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Journal Article
COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases
Chen, Chuming, Ross, Karen E, Gavali, Sachin, Cowart, Julie E, Wu, Cathy H
Published in Bioinformatics (07.12.2021)
Published in Bioinformatics (07.12.2021)
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Web Resource
A fast Peptide Match service for UniProt Knowledgebase
Chen, Chuming, Li, Zhiwen, Huang, Hongzhan, Suzek, Baris E, Wu, Cathy H
Published in Bioinformatics (01.11.2013)
Published in Bioinformatics (01.11.2013)
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Journal Article
Overview of the BioCreative III Workshop
Arighi, Cecilia N, Lu, Zhiyong, Krallinger, Martin, Cohen, Kevin B, Wilbur, W John, Valencia, Alfonso, Hirschman, Lynette, Wu, Cathy H
Published in BMC bioinformatics (03.10.2011)
Published in BMC bioinformatics (03.10.2011)
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TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis
Ross, Karen, Varani, Alessandro M, Snesrud, Erik, Huang, Hongzhan, Alvarenga, Danillo Oliveira, Zhang, Jian, Wu, Cathy, McGann, Patrick, Chandler, Mick
Published in mBio (26.10.2021)
Published in mBio (26.10.2021)
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The Human Proteome Project: Current State and Future Direction
Legrain, Pierre, Aebersold, Ruedi, Archakov, Alexander, Bairoch, Amos, Bala, Kumar, Beretta, Laura, Bergeron, John, Borchers, Christoph H., Corthals, Garry L., Costello, Catherine E., Deutsch, Eric W., Domon, Bruno, Hancock, William, He, Fuchu, Hochstrasser, Denis, Marko-Varga, György, Salekdeh, Ghasem Hosseini, Sechi, Salvatore, Snyder, Michael, Srivastava, Sudhir, Uhlén, Mathias, Wu, Cathy H., Yamamoto, Tadashi, Paik, Young-Ki, Omenn, Gilbert S.
Published in Molecular & cellular proteomics (01.07.2011)
Published in Molecular & cellular proteomics (01.07.2011)
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