Detecting DNA cytosine methylation using nanopore sequencing
Simpson, Jared T, Workman, Rachael E, Zuzarte, P C, David, Matei, Dursi, L J, Timp, Winston
Published in Nature methods (01.04.2017)
Published in Nature methods (01.04.2017)
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Journal Article
Nanopore sequencing detects structural variants in cancer
Norris, Alexis L., Workman, Rachael E., Fan, Yunfan, Eshleman, James R., Timp, Winston
Published in Cancer biology & therapy (03.03.2016)
Published in Cancer biology & therapy (03.03.2016)
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Journal Article
Targeted DNA methylation in human cells using engineered dCas9-methyltransferases
Xiong, Tina, Meister, Glenna E., Workman, Rachael E., Kato, Nathaniel C., Spellberg, Michael J., Turker, Fulya, Timp, Winston, Ostermeier, Marc, Novina, Carl D.
Published in Scientific reports (27.07.2017)
Published in Scientific reports (27.07.2017)
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Journal Article
A natural single-guide RNA repurposes Cas9 to autoregulate CRISPR-Cas expression
Workman, Rachael E., Pammi, Teja, Nguyen, Binh T.K., Graeff, Leonardo W., Smith, Erika, Sebald, Suzanne M., Stoltzfus, Marie J., Euler, Chad W., Modell, Joshua W.
Published in Cell (04.02.2021)
Published in Cell (04.02.2021)
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Journal Article
Protein engineering strategies for improving the selective methylation of target CpG sites by a dCas9-directed cytosine methyltransferase in bacteria
Xiong, Tina, Rohm, Dahlia, Workman, Rachael E, Roundtree, Lauren, Novina, Carl D, Timp, Winston, Ostermeier, Marc
Published in PloS one (18.12.2018)
Published in PloS one (18.12.2018)
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Journal Article
High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome
Marrano, Annarita, Britton, Monica, Zaini, Paulo A, Zimin, Aleksey V, Workman, Rachael E, Puiu, Daniela, Bianco, Luca, Pierro, Erica Adele Di, Allen, Brian J, Chakraborty, Sandeep, Troggio, Michela, Leslie, Charles A, Timp, Winston, Dandekar, Abhaya, Salzberg, Steven L, Neale, David B
Published in Gigascience (01.05.2020)
Published in Gigascience (01.05.2020)
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Journal Article
Characterization of human telomerase reverse transcriptase promoter methylation and transcription factor binding in differentiated thyroid cancer cell lines
Avin, Brittany A., Wang, Yongchun, Gilpatrick, Timothy, Workman, Rachael E., Lee, Isac, Timp, Winston, Umbricht, Christopher B., Zeiger, Martha A.
Published in Genes chromosomes & cancer (01.08.2019)
Published in Genes chromosomes & cancer (01.08.2019)
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Journal Article
Genomic insights into metabolic flux in hummingbirds
Gershman, Ariel, Hauck, Quinn, Dick, Morag, Jamison, Jerrica M, Tassia, Michael, Agirrezabala, Xabier, Muhammad, Saad, Ali, Raafay, Workman, Rachael E, Valle, Mikel, Wong, G William, Welch, Jr, Kenneth C, Timp, Winston
Published in Genome research (01.05.2023)
Published in Genome research (01.05.2023)
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Journal Article
Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin
Neale, David B, Zimin, Aleksey V, Zaman, Sumaira, Scott, Alison D, Shrestha, Bikash, Workman, Rachael E, Puiu, Daniela, Allen, Brian J, Moore, Zane J, Sekhwal, Manoj K, De La Torre, Amanda R, McGuire, Patrick E, Burns, Emily, Timp, Winston, Wegrzyn, Jill L, Salzberg, Steven L
Published in G3 : genes - genomes - genetics (01.01.2022)
Published in G3 : genes - genomes - genetics (01.01.2022)
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Journal Article
A Reference Genome Sequence for Giant Sequoia
Scott, Alison D, Zimin, Aleksey V, Puiu, Daniela, Workman, Rachael, Britton, Monica, Zaman, Sumaira, Caballero, Madison, Read, Andrew C, Bogdanove, Adam J, Burns, Emily, Wegrzyn, Jill, Timp, Winston, Salzberg, Steven L, Neale, David B
Published in G3 : genes - genomes - genetics (01.11.2020)
Published in G3 : genes - genomes - genetics (01.11.2020)
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Journal Article
Metagenomic next-generation sequencing of rectal swabs for the surveillance of antimicrobial-resistant organisms on the Illumina Miseq and Oxford MinION platforms
Yee, Rebecca, Breitwieser, Florian P., Hao, Stephanie, Opene, Belita N.A., Workman, Rachael E., Tamma, Pranita D., Dien-Bard, Jennifer, Timp, Winston, Simner, Patricia J.
Published in European journal of clinical microbiology & infectious diseases (2021)
Published in European journal of clinical microbiology & infectious diseases (2021)
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Journal Article
Nanopore native RNA sequencing of a human poly(A) transcriptome
Workman, Rachael E., Tang, Alison D., Tang, Paul S., Jain, Miten, Tyson, John R., Razaghi, Roham, Zuzarte, Philip C., Gilpatrick, Timothy, Payne, Alexander, Quick, Joshua, Sadowski, Norah, Holmes, Nadine, de Jesus, Jaqueline Goes, Jones, Karen L., Soulette, Cameron M., Snutch, Terrance P., Loman, Nicholas, Paten, Benedict, Loose, Matthew, Simpson, Jared T., Olsen, Hugh E., Brooks, Angela N., Akeson, Mark, Timp, Winston
Published in Nature methods (01.12.2019)
Published in Nature methods (01.12.2019)
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Journal Article
Single-molecule, full-length transcript sequencing provides insight into the extreme metabolism of the ruby-throated hummingbird Archilochus colubris
Workman, Rachael E, Myrka, Alexander M, Wong, G William, Tseng, Elizabeth, Welch, Jr, Kenneth C, Timp, Winston
Published in Gigascience (01.03.2018)
Published in Gigascience (01.03.2018)
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Journal Article
Multiplexed analysis of fixed tissue RNA using Ligation in situ Hybridization
Credle, Joel J, Itoh, Christopher Y, Yuan, Tiezheng, Sharma, Rajni, Scott, Erick R, Workman, Rachael E, Fan, Yunfan, Housseau, Franck, Llosa, Nicolas J, Bell, W Robert, Miller, Heather, Zhang, Sean X, Timp, Winston, Larman, H Benjamin
Published in Nucleic acids research (21.08.2017)
Published in Nucleic acids research (21.08.2017)
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Journal Article
Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome
Workman, Rachael E., Tang, Alison D., Tang, Paul S., Jain, Miten, Tyson, John R., Razaghi, Roham, Zuzarte, Philip C., Gilpatrick, Timothy, Payne, Alexander, Quick, Joshua, Sadowski, Norah, Holmes, Nadine, de Jesus, Jaqueline Goes, Jones, Karen L., Soulette, Cameron M., Snutch, Terrance P., Loman, Nicholas, Paten, Benedict, Loose, Matthew, Simpson, Jared T., Olsen, Hugh E., Brooks, Angela N., Akeson, Mark, Timp, Winston
Published in Nature methods (2020)
Published in Nature methods (2020)
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Journal Article
First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans )
Luo, Ruibang, Zimin, Aleksey, Workman, Rachael, Fan, Yunfan, Pertea, Geo, Grossman, Nina, Wear, Maggie P, Jia, Bei, Miller, Heather, Casadevall, Arturo, Timp, Winston, Zhang, Sean X, Salzberg, Steven L
Published in G3 : genes - genomes - genetics (01.11.2017)
Published in G3 : genes - genomes - genetics (01.11.2017)
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Journal Article
Signal Analysis of Nanopore RNA Sequencing to Interrogate Poly(A) Tails and Post-Transcriptional Modifications
Razaghi, Roham, Gilpatrick, Timothy, Sadowski, Norah, Tang, Paul, Workman, Rachael, Simpson, Jared, Timp, Winston
Published in Biophysical journal (15.02.2019)
Published in Biophysical journal (15.02.2019)
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