Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Schneider, Valerie A, Graves-Lindsay, Tina, Howe, Kerstin, Bouk, Nathan, Chen, Hsiu-Chuan, Kitts, Paul A, Murphy, Terence D, Pruitt, Kim D, Thibaud-Nissen, Françoise, Albracht, Derek, Fulton, Robert S, Kremitzki, Milinn, Magrini, Vincent, Markovic, Chris, McGrath, Sean, Steinberg, Karyn Meltz, Auger, Kate, Chow, William, Collins, Joanna, Harden, Glenn, Hubbard, Timothy, Pelan, Sarah, Simpson, Jared T, Threadgold, Glen, Torrance, James, Wood, Jonathan M, Clarke, Laura, Koren, Sergey, Boitano, Matthew, Peluso, Paul, Li, Heng, Chin, Chen-Shan, Phillippy, Adam M, Durbin, Richard, Wilson, Richard K, Flicek, Paul, Eichler, Evan E, Church, Deanna M
Published in Genome research (01.05.2017)
Published in Genome research (01.05.2017)
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Journal Article
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
Mc Cartney, Ann M., Shafin, Kishwar, Alonge, Michael, Bzikadze, Andrey V., Formenti, Giulio, Fungtammasan, Arkarachai, Howe, Kerstin, Jain, Chirag, Koren, Sergey, Logsdon, Glennis A., Miga, Karen H., Mikheenko, Alla, Paten, Benedict, Shumate, Alaina, Soto, Daniela C., Sović, Ivan, Wood, Jonathan M. D., Zook, Justin M., Phillippy, Adam M., Rhie, Arang
Published in Nature methods (01.06.2022)
Published in Nature methods (01.06.2022)
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Journal Article
Genomics of cold adaptations in the Antarctic notothenioid fish radiation
Bista, Iliana, Wood, Jonathan M. D., Desvignes, Thomas, McCarthy, Shane A., Matschiner, Michael, Ning, Zemin, Tracey, Alan, Torrance, James, Sims, Ying, Chow, William, Smith, Michelle, Oliver, Karen, Haggerty, Leanne, Salzburger, Walter, Postlethwait, John H., Howe, Kerstin, Clark, Melody S., William Detrich, H., Christina Cheng, C.-H., Miska, Eric A., Durbin, Richard
Published in Nature communications (09.06.2023)
Published in Nature communications (09.06.2023)
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Journal Article
Temporal genomics in Hawaiian crickets reveals compensatory intragenomic coadaptation during adaptive evolution
Zhang, Xiao, Blaxter, Mark, Wood, Jonathan M. D., Tracey, Alan, McCarthy, Shane, Thorpe, Peter, Rayner, Jack G., Zhang, Shangzhe, Sikkink, Kirstin L., Balenger, Susan L., Bailey, Nathan W.
Published in Nature communications (12.06.2024)
Published in Nature communications (12.06.2024)
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Journal Article
Toward Chirality‐Encoded Domain Wall Logic
Omari, Khalid A., Broomhall, Thomas J., Dawidek, Richard W. S., Allwood, Dan A., Bradley, Ruth C., Wood, Jonathan M., Fry, Paul W., Rosamond, Mark C., Linfield, Edmund H., Im, Mi‐Young, Fischer, Peter J., Hayward, Tom J.
Published in Advanced functional materials (07.03.2019)
Published in Advanced functional materials (07.03.2019)
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Journal Article
A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.)
Generalovic, Tomas N, McCarthy, Shane A, Warren, Ian A, Wood, Jonathan M D, Torrance, James, Sims, Ying, Quail, Michael, Howe, Kerstin, Pipan, Miha, Durbin, Richard, Jiggins, Chris D
Published in G3 : genes - genomes - genetics (01.05.2021)
Published in G3 : genes - genomes - genetics (01.05.2021)
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Journal Article
Chromosome level genome assembly of the Etruscan shrew Suncus etruscus
Bukhman, Yury V., Meyer, Susanne, Chu, Li-Fang, Abueg, Linelle, Antosiewicz-Bourget, Jessica, Balacco, Jennifer, Brecht, Michael, Dinatale, Erica, Fedrigo, Olivier, Formenti, Giulio, Fungtammasan, Arkarachai, Giri, Swagarika Jaharlal, Hiller, Michael, Howe, Kerstin, Kihara, Daisuke, Mamott, Daniel, Mountcastle, Jacquelyn, Pelan, Sarah, Rabbani, Keon, Sims, Ying, Tracey, Alan, Wood, Jonathan M. D., Jarvis, Erich D., Thomson, James A., Chaisson, Mark J. P., Stewart, Ron
Published in Scientific data (07.02.2024)
Published in Scientific data (07.02.2024)
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Journal Article
A reliable and efficient adaptive Bayesian method to assess static lower limb position sense
Wood, Jonathan M., Morton, Susanne M., Kim, Hyosub E.
Published in Journal of neuroscience methods (15.05.2023)
Published in Journal of neuroscience methods (15.05.2023)
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Journal Article
A chromosomal reference genome sequence for the malaria mosquito, Anopheles moucheti , Evans, 1925
Nsango, Sandrine N, Agbor, Jean-Pierre, Ayala, Diego, Johnson, Harriet F, Heaton, Haynes, Wagah, Martin G, Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano Da Silva, Marcela, Wood, Jonathan M D, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara
Published in Wellcome open research (2023)
Published in Wellcome open research (2023)
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Journal Article
Individuals early after anterior cruciate ligament reconstruction show intact motor learning of step length via the split-belt treadmill
Arhos, Elanna K., Wood, Jonathan M., Silbernagel, Karin Grävare, Morton, Susanne M.
Published in Clinical biomechanics (Bristol) (01.05.2024)
Published in Clinical biomechanics (Bristol) (01.05.2024)
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Journal Article
Roles and interplay of reinforcement-based and error-based processes during reaching and gait in neurotypical adults and individuals with Parkinson's disease
Roth, Adam M, Buggeln, John H, Hoh, Joanna E, Wood, Jonathan M, Sullivan, Seth R, Ngo, Truc T, Calalo, Jan A, Lokesh, Rakshith, Morton, Susanne M, Grill, Stephen, Jeka, John J, Carter, Michael J, Cashaback, Joshua G A
Published in PLoS computational biology (01.10.2024)
Published in PLoS computational biology (01.10.2024)
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Journal Article
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography
Bukhman, Yury V, Morin, Phillip A, Meyer, Susanne, Chu, Li-Fang, Jacobsen, Jeff K, Antosiewicz-Bourget, Jessica, Mamott, Daniel, Gonzales, Maylie, Argus, Cara, Bolin, Jennifer, Berres, Mark E, Fedrigo, Olivier, Steill, John, Swanson, Scott A, Jiang, Peng, Rhie, Arang, Formenti, Giulio, Phillippy, Adam M, Harris, Robert S, Wood, Jonathan M D, Howe, Kerstin, Kirilenko, Bogdan M, Munegowda, Chetan, Hiller, Michael, Jain, Aashish, Kihara, Daisuke, Johnston, J Spencer, Ionkov, Alexander, Raja, Kalpana, Toh, Huishi, Lang, Aimee, Wolf, Magnus, Jarvis, Erich D, Thomson, James A, Chaisson, Mark J P, Stewart, Ron
Published in Molecular biology and evolution (01.03.2024)
Published in Molecular biology and evolution (01.03.2024)
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Journal Article
Atypical valuation of monetary and cigarette rewards in substance dependent smokers
Baker, Travis E, Wood, Jonathan M.A, Holroyd, Clay B
Published in Clinical neurophysiology (01.02.2016)
Published in Clinical neurophysiology (01.02.2016)
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Journal Article
Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis
De Jode, Aurélien, Faria, Rui, Formenti, Giulio, Sims, Ying, Smith, Timothy P, Tracey, Alan, Wood, Jonathan M D, Zagrodzka, Zuzanna B, Johannesson, Kerstin, Butlin, Roger K, Leder, Erica H
Published in Genome biology and evolution (02.04.2024)
Published in Genome biology and evolution (02.04.2024)
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