Roary: rapid large-scale prokaryote pan genome analysis
Page, Andrew J, Cummins, Carla A, Hunt, Martin, Wong, Vanessa K, Reuter, Sandra, Holden, Matthew T G, Fookes, Maria, Falush, Daniel, Keane, Jacqueline A, Parkhill, Julian
Published in Bioinformatics (Oxford, England) (15.11.2015)
Published in Bioinformatics (Oxford, England) (15.11.2015)
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An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid
Wong, Vanessa K., Baker, Stephen, Connor, Thomas R., Pickard, Derek, Page, Andrew J., Dave, Jayshree, Murphy, Niamh, Holliman, Richard, Sefton, Armine, Millar, Michael, Dyson, Zoe A., Dougan, Gordon, Holt, Kathryn E.
Published in Nature communications (05.10.2016)
Published in Nature communications (05.10.2016)
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A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
Argimón, Silvia, Yeats, Corin A., Goater, Richard J., Abudahab, Khalil, Taylor, Benjamin, Underwood, Anthony, Sánchez-Busó, Leonor, Wong, Vanessa K., Dyson, Zoe A., Nair, Satheesh, Park, Se Eun, Marks, Florian, Page, Andrew J., Keane, Jacqueline A., Baker, Stephen, Holt, Kathryn E., Dougan, Gordon, Aanensen, David M.
Published in Nature communications (17.05.2021)
Published in Nature communications (17.05.2021)
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A mycotic aneurysm related to Salmonella Rissen infection: a case report
Nagrodzki, Jakub, Sharrocks, Katherine E, Wong, Vanessa K, Carmichael, Andrew J
Published in BMC infectious diseases (31.01.2020)
Published in BMC infectious diseases (31.01.2020)
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Continuous and repeat metabolic measurements compared between post-cardiothoracic surgery and critical care patients
Shinozaki, Koichiro, Yu, Pey-Jen, Zhou, Qiuping, Cassiere, Hugh A, John, Stanley, Rolston, Daniel M, Garg, Nidhi, Li, Timmy, Johnson, Jennifer, Saeki, Kota, Goto, Taiki, Okuma, Yu, Miyara, Santiago J, Hayashida, Kei, Aoki, Tomoaki, Wong, Vanessa K, Molmenti, Ernesto P, Lampe, Joshua W, Becker, Lance B
Published in BMC pulmonary medicine (16.10.2023)
Published in BMC pulmonary medicine (16.10.2023)
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Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins
Klemm, Elizabeth J, Shakoor, Sadia, Page, Andrew J, Qamar, Farah Naz, Judge, Kim, Saeed, Dania K, Wong, Vanessa K, Dallman, Timothy J, Nair, Satheesh, Baker, Stephen, Shaheen, Ghazala, Qureshi, Shahida, Yousafzai, Mohammad Tahir, Saleem, Muhammad Khalid, Hasan, Zahra, Dougan, Gordon, Hasan, Rumina
Published in mBio (20.02.2018)
Published in mBio (20.02.2018)
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Characterization of the yehUT two-component regulatory system of Salmonella enterica Serovar Typhi and Typhimurium
Wong, Vanessa K, Pickard, Derek J, Barquist, Lars, Sivaraman, Karthikeyan, Page, Andrew J, Hart, Peter J, Arends, Mark J, Holt, Kathryn E, Kane, Leanne, Mottram, Lynda F, Ellison, Louise, Bautista, Ruben, McGee, Chris J, Kay, Sally J, Wileman, Thomas M, Kenney, Linda J, MacLennan, Calman A, Kingsley, Robert A, Dougan, Gordon
Published in PloS one (30.12.2013)
Published in PloS one (30.12.2013)
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Salmonella enterica serovar Typhi Producing CTX-M-15 Extended Spectrum β-Lactamase in the Democratic Republic of the Congo
Phoba, Marie-France, Barbé, Barbara, Lunguya, Octavie, Masendu, Lysette, Lulengwa, Deo, Dougan, Gordon, Wong, Vanessa K., Bertrand, Sophie, Ceyssens, Pieter-Jan, Jacobs, Jan, Van Puyvelde, Sandra, Deborggraeve, Stijn
Published in Clinical infectious diseases (01.10.2017)
Published in Clinical infectious diseases (01.10.2017)
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Low respiratory quotient correlates with high mortality in patients undergoing mechanical ventilation
Shinozaki, Koichiro, Yu, Pey-Jen, Zhou, Qiuping, Cassiere, Hugh A., John, Stanley, Rolston, Daniel M., Garg, Nidhi, Li, Timmy, Johnson, Jennifer, Saeki, Kota, Goto, Taiki, Okuma, Yu, Miyara, Santiago J., Hayashida, Kei, Aoki, Tomoaki, Wong, Vanessa K., Molmenti, Ernesto P., Lampe, Joshua W., Becker, Lance B.
Published in The American journal of emergency medicine (01.04.2024)
Published in The American journal of emergency medicine (01.04.2024)
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Genomic epidemiology of Salmonella Typhi in Central Division, Fiji, 2012 to 2016
Davies, Mark R., Duchene, Sebastian, Valcanis, Mary, Jenkins, Aaron P., Jenney, Adam, Rosa, Varanisese, Hayes, Andrew J., Strobel, Aneley Getahun, McIntyre, Liam, Lacey, Jake A., Klemm, Elizabeth J., Wong, Vanessa K., Sahukhan, Aalisha, Thomson, Helen, Page, Andrew, Hocking, Dianna, Wang, Nancy, Tudravu, Litia, Rafai, Eric, Dougan, Gordon, Howden, Benjamin P., Crump, John A., Mulholland, Kim, Strugnell, Richard A.
Published in The Lancet regional health. Western Pacific (01.07.2022)
Published in The Lancet regional health. Western Pacific (01.07.2022)
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The emergence and intercontinental spread of a multidrug-resistant clade of typhoid agent Salmonella enterica serovar Typhi
Wong, Vanessa K, Dr, Baker, Stephen, PhD, Pickard, Derek, PhD, Page, Andrew J, PhD, Feasey, Nicholas A, PhD, Dougan, Gordon, Prof, Holt, Kathryn E, Prof
Published in The Lancet (British edition) (25.02.2016)
Published in The Lancet (British edition) (25.02.2016)
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In silico analysis of 16S ribosomal RNA gene sequencing-based methods for identification of medically important anaerobic bacteria
Woo, Patrick C Y, Chung, Liliane M W, Teng, Jade L L, Tse, Herman, Pang, Sherby S Y, Lau, Veronica Y T, Wong, Vanessa W K, Kam, Kwok-ling, Lau, Susanna K P, Yuen, Kwok-Yung
Published in Journal of clinical pathology (01.05.2007)
Published in Journal of clinical pathology (01.05.2007)
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Salmonella pyomyositis complicating sickle cell anemia: a case report
Wong, Vanessa K, Lissack, Maxine E, Turmezei, Tom D, Maitland, Jenny A
Published in Journal of medical case reports (30.06.2010)
Published in Journal of medical case reports (30.06.2010)
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Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
Wong, Vanessa K, Baker, Stephen, Pickard, Derek J, Parkhill, Julian, Page, Andrew J, Feasey, Nicholas A, Kingsley, Robert A, Thomson, Nicholas R, Keane, Jacqueline A, Weill, François-Xavier, Edwards, David J, Hawkey, Jane, Harris, Simon R, Mather, Alison E, Cain, Amy K, Hadfield, James, Hart, Peter J, Thieu, Nga Tran Vu, Klemm, Elizabeth J, Glinos, Dafni A, Breiman, Robert F, Watson, Conall H, Kariuki, Samuel, Gordon, Melita A, Heyderman, Robert S, Okoro, Chinyere, Jacobs, Jan, Lunguya, Octavie, Edmunds, W John, Msefula, Chisomo, Chabalgoity, Jose A, Kama, Mike, Jenkins, Kylie, Dutta, Shanta, Marks, Florian, Campos, Josefina, Thompson, Corinne, Obaro, Stephen, MacLennan, Calman A, Dolecek, Christiane, Keddy, Karen H, Smith, Anthony M, Parry, Christopher M, Karkey, Abhilasha, Mulholland, E Kim, Campbell, James I, Dongol, Sabina, Basnyat, Buddha, Dufour, Muriel, Bandaranayake, Don, Naseri, Take Toleafoa, Singh, Shalini Pravin, Hatta, Mochammad, Newton, Paul, Onsare, Robert S, Isaia, Lupeoletalalei, Dance, David, Davong, Viengmon, Thwaites, Guy, Wijedoru, Lalith, Crump, John A, De Pinna, Elizabeth, Nair, Satheesh, Nilles, Eric J, Thanh, Duy Pham, Turner, Paul, Soeng, Sona, Valcanis, Mary, Powling, Joan, Dimovski, Karolina, Hogg, Geoff, Farrar, Jeremy, Holt, Kathryn E, Dougan, Gordon
Published in Nature genetics (01.06.2015)
Published in Nature genetics (01.06.2015)
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The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa
Park, Se Eun, Pham, Duy Thanh, Boinett, Christine, Wong, Vanessa K., Pak, Gi Deok, Panzner, Ursula, Espinoza, Ligia Maria Cruz, von Kalckreuth, Vera, Im, Justin, Schütt-Gerowitt, Heidi, Crump, John A., Breiman, Robert F., Adu-Sarkodie, Yaw, Owusu-Dabo, Ellis, Rakotozandrindrainy, Raphaël, Soura, Abdramane Bassiahi, Aseffa, Abraham, Gasmelseed, Nagla, Keddy, Karen H., May, Jürgen, Sow, Amy Gassama, Aaby, Peter, Biggs, Holly M., Hertz, Julian T., Montgomery, Joel M., Cosmas, Leonard, Olack, Beatrice, Fields, Barry, Sarpong, Nimako, Razafindrabe, Tsiriniaina Jean Luco, Raminosoa, Tiana Mirana, Kabore, Leon Parfait, Sampo, Emmanuel, Teferi, Mekonnen, Yeshitela, Biruk, El Tayeb, Muna Ahmed, Sooka, Arvinda, Meyer, Christian G., Krumkamp, Ralf, Dekker, Denise Myriam, Jaeger, Anna, Poppert, Sven, Tall, Adama, Niang, Aissatou, Bjerregaard-Andersen, Morten, Løfberg, Sandra Valborg, Seo, Hye Jin, Jeon, Hyon Jin, Deerin, Jessica Fung, Park, Jinkyung, Konings, Frank, Ali, Mohammad, Clemens, John D., Hughes, Peter, Sendagala, Juliet Nsimire, Vudriko, Tobias, Downing, Robert, Ikumapayi, Usman N., Mackenzie, Grant A., Obaro, Stephen, Argimon, Silvia, Aanensen, David M., Page, Andrew, Keane, Jacqueline A., Duchene, Sebastian, Dyson, Zoe, Holt, Kathryn E., Dougan, Gordon, Marks, Florian, Baker, Stephen
Published in Nature communications (30.11.2018)
Published in Nature communications (30.11.2018)
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Journal Article
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
Carey, Megan E, Dyson, Zoe A, Ingle, Danielle J, Amir, Afreenish, Aworh, Mabel K, Chattaway, Marie Anne, Chew, Ka Lip, Crump, John A, Feasey, Nicholas A, Howden, Benjamin P, Keddy, Karen H, Maes, Mailis, Parry, Christopher M, Van Puyvelde, Sandra, Webb, Hattie E, Afolayan, Ayorinde Oluwatobiloba, Alexander, Anna P, Anandan, Shalini, Andrews, Jason R, Ashton, Philip M, Basnyat, Buddha, Bavdekar, Ashish, Bogoch, Isaac I, Clemens, John D, da Silva, Kesia Esther, De, Anuradha, de Ligt, Joep, Diaz Guevara, Paula Lucia, Dolecek, Christiane, Dutta, Shanta, Ehlers, Marthie M, Francois Watkins, Louise, Garrett, Denise O, Godbole, Gauri, Gordon, Melita A, Greenhill, Andrew R, Griffin, Chelsey, Gupta, Madhu, Hendriksen, Rene S, Heyderman, Robert S, Hooda, Yogesh, Hormazabal, Juan Carlos, Ikhimiukor, Odion O, Iqbal, Junaid, Jacob, Jobin John, Jenkins, Claire, Jinka, Dasaratha Ramaiah, John, Jacob, Kang, Gagandeep, Kanteh, Abdoulie, Kapil, Arti, Karkey, Abhilasha, Kariuki, Samuel, Kingsley, Robert A, Koshy, Roshine Mary, Lauer, A C, Levine, Myron M, Lingegowda, Ravikumar Kadahalli, Luby, Stephen P, Mackenzie, Grant Austin, Mashe, Tapfumanei, Msefula, Chisomo, Mutreja, Ankur, Nagaraj, Geetha, Nagaraj, Savitha, Nair, Satheesh, Naseri, Take K, Nimarota-Brown, Susana, Njamkepo, Elisabeth, Okeke, Iruka N, Perumal, Sulochana Putli Bai, Pollard, Andrew J, Pragasam, Agila Kumari, Qadri, Firdausi, Qamar, Farah N, Rahman, Sadia Isfat Ara, Rambocus, Savitra Devi, Rasko, David A, Ray, Pallab, Robins-Browne, Roy, Rongsen-Chandola, Temsunaro, Rutanga, Jean Pierre, Saha, Samir K, Saha, Senjuti, Saigal, Karnika, Sajib, Mohammad Saiful Islam, Seidman, Jessica C, Shakya, Jivan, Shamanna, Varun, Shastri, Jayanthi, Shrestha, Rajeev, Sia, Sonia, Sikorski, Michael J, Singh, Ashita, Smith, Anthony M, Tagg, Kaitlin A, Tamrakar, Dipesh, Tanmoy, Arif Mohammed, Thomas, Maria, Thomas, Mathew S
Published in eLife (12.09.2023)
Published in eLife (12.09.2023)
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