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Gene set analysis of genome-wide association studies: Methodological issues and perspectives
Wang, Lily, Jia, Peilin, Wolfinger, Russell D., Chen, Xi, Zhao, Zhongming
Published in Genomics (San Diego, Calif.) (01.07.2011)
Published in Genomics (San Diego, Calif.) (01.07.2011)
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Global Analysis of Arabidopsis Gene Expression Uncovers a Complex Array of Changes Impacting Pathogen Response and Cell Cycle during Geminivirus Infection
Ascencio-Ibáñez, José Trinidad, Sozzani, Rosangela, Lee, Tae-Jin, Chu, Tzu-Ming, Wolfinger, Russell D, Cella, Rino, Hanley-Bowdoin, Linda
Published in Plant physiology (Bethesda) (01.09.2008)
Published in Plant physiology (Bethesda) (01.09.2008)
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A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Yu, Ying, Fuscoe, James C., Zhao, Chen, Guo, Chao, Jia, Meiwen, Qing, Tao, Bannon, Desmond I., Lancashire, Lee, Bao, Wenjun, Du, Tingting, Luo, Heng, Su, Zhenqiang, Jones, Wendell D., Moland, Carrie L., Branham, William S., Qian, Feng, Ning, Baitang, Li, Yan, Hong, Huixiao, Guo, Lei, Mei, Nan, Shi, Tieliu, Wang, Kevin Y., Wolfinger, Russell D., Nikolsky, Yuri, Walker, Stephen J., Duerksen-Hughes, Penelope, Mason, Christopher E., Tong, Weida, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Shi, Leming, Wang, Charles
Published in Nature communications (10.02.2014)
Published in Nature communications (10.02.2014)
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Flusion: Integrating multiple data sources for accurate influenza predictions
Ray, Evan L., Wang, Yijin, Wolfinger, Russell D., Reich, Nicholas G.
Published in Epidemics (01.03.2025)
Published in Epidemics (01.03.2025)
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Breeding-assisted genomics: Applying meta-GWAS for milling and baking quality in CIMMYT wheat breeding program
Battenfield, Sarah D., Sheridan, Jaime L., Silva, Luciano D. C. E., Miclaus, Kelci J., Dreisigacker, Susanne, Wolfinger, Russell D., Peña, Roberto J., Singh, Ravi P., Jackson, Eric W., Fritz, Allan. K., Guzmán, Carlos, Poland, Jesse A.
Published in PloS one (29.11.2018)
Published in PloS one (29.11.2018)
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Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project
Patterson, Tucker A, Lobenhofer, Edward K, Fulmer-Smentek, Stephanie B, Collins, Patrick J, Chu, Tzu-Ming, Bao, Wenjun, Fang, Hong, Kawasaki, Ernest S, Hager, Janet, Tikhonova, Irina R, Walker, Stephen J, Zhang, Liang, Hurban, Patrick, de Longueville, Francoise, Fuscoe, James C, Tong, Weida, Shi, Leming, Wolfinger, Russell D
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Geographical genomics of human leukocyte gene expression variation in southern Morocco
Idaghdour, Youssef, Czika, Wendy, Shianna, Kevin V, Lee, Sang H, Visscher, Peter M, Martin, Hilary C, Miclaus, Kelci, Jadallah, Sami J, Goldstein, David B, Wolfinger, Russell D, Gibson, Greg
Published in Nature genetics (01.01.2010)
Published in Nature genetics (01.01.2010)
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e-Cigarettes, Smoking Cessation, and Weight Change: Retrospective Secondary Analysis of the Evaluating the Efficacy of e-Cigarette Use for Smoking Cessation Trial
Lyzwinski, Lynnette, Dong, Meichen, Wolfinger, Russell D, Filion, Kristian B, Eisenberg, Mark J
Published in JMIR public health and surveillance (16.09.2024)
Published in JMIR public health and surveillance (16.09.2024)
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Technical Reproducibility of Genotyping SNP Arrays Used in Genome-Wide Association Studies
Hong, Huixiao, Xu, Lei, Liu, Jie, Jones, Wendell D., Su, Zhenqiang, Ning, Baitang, Perkins, Roger, Ge, Weigong, Miclaus, Kelci, Zhang, Li, Park, Kyunghee, Green, Bridgett, Han, Tao, Fang, Hong, Lambert, Christophe G., Vega, Silvia C., Lin, Simon M., Jafari, Nadereh, Czika, Wendy, Wolfinger, Russell D., Goodsaid, Federico, Tong, Weida, Shi, Leming
Published in PloS one (07.09.2012)
Published in PloS one (07.09.2012)
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Automatic text classification of drug-induced liver injury using document-term matrix and XGBoost
Chen, Minjun, Wu, Yue, Wingerd, Byron, Liu, Zhichao, Xu, Joshua, Thakkar, Shraddha, Pedersen, Thomas J., Donnelly, Tom, Mann, Nicholas, Tong, Weida, Wolfinger, Russell D., Bao, Wenjun
Published in Frontiers in artificial intelligence (03.06.2024)
Published in Frontiers in artificial intelligence (03.06.2024)
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Statistical Analysis of Relative Labeled Mass Spectrometry Data from Complex Samples Using ANOVA
Oberg, Ann L, Mahoney, Douglas W, Eckel-Passow, Jeanette E, Malone, Christopher J, Wolfinger, Russell D, Hill, Elizabeth G, Cooper, Leslie T, Onuma, Oyere K, Spiro, Craig, Therneau, Terry M, Bergen, III, H. Robert
Published in Journal of proteome research (01.01.2008)
Published in Journal of proteome research (01.01.2008)
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Two approaches for estimating the lower limit of quantitation (LLOQ) of microRNA levels assayed as exploratory biomarkers by RT-qPCR
Wolfinger, Russell D., Beedanagari, Sudheer, Boitier, Eric, Chen, Tao, Couttet, Philippe, Ellinger-Ziegelbauer, Heidrun, Guillemain, Gregory, Mariet, Claire, Mouritzen, Peter, O’Lone, Raegan, Pine, P. Scott, Sharapova, Tatiana, Yan, Jian, Yuen, Peter S., Thompson, Karol L.
Published in BMC biotechnology (02.02.2018)
Published in BMC biotechnology (02.02.2018)
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An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies
Wang, Lily, Jia, Peilin, Wolfinger, Russell D., Chen, Xi, Grayson, Britney L., Aune, Thomas M., Zhao, Zhongming
Published in Bioinformatics (Oxford, England) (01.03.2011)
Published in Bioinformatics (Oxford, England) (01.03.2011)
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Summarizing the incidence of adverse events using volcano plots and time intervals
Zink, Richard C, Wolfinger, Russell D, Mann, Geoffrey
Published in Clinical trials (London, England) (01.06.2013)
Published in Clinical trials (London, England) (01.06.2013)
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Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories
Boedigheimer, Michael J, Wolfinger, Russell D, Bass, Michael B, Bushel, Pierre R, Chou, Jeff W, Cooper, Matthew, Corton, J Christopher, Fostel, Jennifer, Hester, Susan, Lee, Janice S, Liu, Fenglong, Liu, Jie, Qian, Hui-Rong, Quackenbush, John, Pettit, Syril, Thompson, Karol L
Published in BMC genomics (12.06.2008)
Published in BMC genomics (12.06.2008)
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Evaluation of external RNA controls for the assessment of microarray performance
Tong, Weida, Lucas, Anne Bergstrom, Shippy, Richard, Fan, Xiaohui, Fang, Hong, Hong, Huixiao, Orr, Michael S, Chu, Tzu-Ming, Guo, Xu, Collins, Patrick J, Sun, Yongming Andrew, Wang, Sue-Jane, Bao, Wenjun, Wolfinger, Russell D, Shchegrova, Svetlana, Guo, Lei, Warrington, Janet A, Shi, Leming
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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A Genomics-Based Analysis of Relative Potencies of Dioxin-Like Compounds in Primary Rat Hepatocytes
Rowlands, J. Craig, Budinsky, Robert, Gollapudi, Bhaskar, Black, Michael B., Wolfinger, Russell D., Cukovic, Daniela, Dombkowski, Alan, Thompson, Chad M., Urban, Jonathan D., Thomas, Russell S.
Published in Toxicological sciences (01.12.2013)
Published in Toxicological sciences (01.12.2013)
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