Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler
Shepard, Samuel S, Meno, Sarah, Bahl, Justin, Wilson, Malania M, Barnes, John, Neuhaus, Elizabeth
Published in BMC genomics (05.09.2016)
Published in BMC genomics (05.09.2016)
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SARS-CoV-2 spike D614G change enhances replication and transmission
Zhou, Bin, Thao, Tran Thi Nhu, Hoffmann, Donata, Taddeo, Adriano, Ebert, Nadine, Labroussaa, Fabien, Pohlmann, Anne, King, Jacqueline, Steiner, Silvio, Kelly, Jenna N., Portmann, Jasmine, Halwe, Nico Joel, Ulrich, Lorenz, Trüeb, Bettina Salome, Fan, Xiaoyu, Hoffmann, Bernd, Wang, Li, Thomann, Lisa, Lin, Xudong, Stalder, Hanspeter, Pozzi, Berta, de Brot, Simone, Jiang, Nannan, Cui, Dan, Hossain, Jaber, Wilson, Malania M., Keller, Matthew W., Stark, Thomas J., Barnes, John R., Dijkman, Ronald, Jores, Joerg, Benarafa, Charaf, Wentworth, David E., Thiel, Volker, Beer, Martin
Published in Nature (London) (01.04.2021)
Published in Nature (London) (01.04.2021)
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Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome
Keller, Matthew W., Rambo-Martin, Benjamin L., Wilson, Malania M., Ridenour, Callie A., Shepard, Samuel S., Stark, Thomas J., Neuhaus, Elizabeth B., Dugan, Vivien G., Wentworth, David E., Barnes, John R.
Published in Scientific reports (26.09.2018)
Published in Scientific reports (26.09.2018)
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Multiplex Real-Time Reverse Transcription PCR for Influenza A Virus, Influenza B Virus, and Severe Acute Respiratory Syndrome Coronavirus 2
Shu, Bo, Kirby, Marie K, Davis, William G, Warnes, Christine, Liddell, Jimma, Liu, Ji, Wu, Kai-Hui, Hassell, Norman, Benitez, Alvaro J, Wilson, Malania M, Keller, Matthew W, Rambo-Martin, Benjamin L, Camara, Yamundow, Winter, Jorn, Kondor, Rebecca J, Zhou, Bin, Spies, Stacey, Rose, Laura E, Winchell, Jonas M, Limbago, Brandi M, Wentworth, David E, Barnes, John R
Published in Emerging infectious diseases (01.07.2021)
Published in Emerging infectious diseases (01.07.2021)
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SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States
Lacek, Kristine A, Rambo-Martin, Benjamin L, Batra, Dhwani, Zheng, Xiao-Yu, Hassell, Norman, Sakaguchi, Hitoshi, Peacock, Thomas, Groves, Natalie, Keller, Matthew, Wilson, Malania M, Sheth, Mili, Davis, Morgan L, Borroughs, Mark, Gerhart, Jonathan, Shepard, Samuel S, Cook, Peter W, Lee, Justin, Wentworth, David E, Barnes, John R, Kondor, Rebecca, Paden, Clinton R
Published in Emerging infectious diseases (01.07.2022)
Published in Emerging infectious diseases (01.07.2022)
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Journal Article
SARS-CoV-2 spike D614G change enhances replication and transmission
Zhou, Bin, Thao, Tran Thi Nhu, Hoffmann, Donata, Taddeo, Adriano, Ebert, Nadine, Labroussaa, Fabien, Pohlmann, Anne, King, Jacqueline, Steiner, Silvio, Kelly, Jenna N., Portmann, Jasmine, Halwe, Nico Joel, Ulrich, Lorenz, Trüeb, Bettina Salome, Fan, Xiaoyu, Hoffmann, Bernd, Wang, Li, Thomann, Lisa, Lin, Xudong, Stalder, Hanspeter, Pozzi, Berta, de Brot, Simone, Jiang, Nannan, Cui, Dan, Hossain, Jaber, Wilson, Malania M., Keller, Matthew W., Stark, Thomas J., Barnes, John R., Dijkman, Ronald, Jores, Joerg, Benarafa, Charaf, Wentworth, David E., Thiel, Volker, Beer, Martin
Published in Nature (London) (01.04.2021)
Published in Nature (London) (01.04.2021)
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Susceptibility to SARS-CoV-2 of Cell Lines and Substrates Commonly Used to Diagnose and Isolate Influenza and Other Viruses
Wang, Li, Fan, Xiaoyu, Bonenfant, Gaston, Cui, Dan, Hossain, Jaber, Jiang, Nannan, Larson, Gloria, Currier, Michael, Liddell, Jimma, Wilson, Malania, Tamin, Azaibi, Harcourt, Jennifer, Ciomperlik-Patton, Jessica, Pang, Hong, Dybdahl-Sissoko, Naomi, Campagnoli, Ray, Shi, Pei-Yong, Barnes, John, Thornburg, Natalie J, Wentworth, David E, Zhou, Bin
Published in Emerging infectious diseases (01.05.2021)
Published in Emerging infectious diseases (01.05.2021)
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Detection of baloxavir resistant influenza A viruses using next generation sequencing and pyrosequencing methods
Patel, Mira C., Mishin, Vasiliy P., De La Cruz, Juan A., Chesnokov, Anton, Nguyen, Ha T., Wilson, Malania M., Barnes, John, Kondor, Rebecca J.G., Wentworth, David E., Gubareva, Larisa V.
Published in Antiviral research (01.10.2020)
Published in Antiviral research (01.10.2020)
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Discriminating North American Swine Influenza Viruses with a Portable, One-Step, Triplex Real-Time RT-PCR Assay, and Portable Sequencing
Kirby, Marie K, Shu, Bo, Keller, Matthew W, Wilson, Malania M, Rambo-Martin, Benjamin L, Jang, Yunho, Liddell, Jimma, Salinas Duron, Eduardo, Nolting, Jacqueline M, Bowman, Andrew S, Davis, C Todd, Wentworth, David E, Barnes, John R
Published in Viruses (30.09.2024)
Published in Viruses (30.09.2024)
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A Heterogeneous Swine Show Circuit Drives Zoonotic Transmission of Influenza A Viruses in the United States
Nelson, Martha I, Perofsky, Amanda, McBride, Dillon S, Rambo-Martin, Benjamin L, Wilson, Malania M, Barnes, John R, van Bakel, Harm, Khan, Zenab, Dutta, Jayeeta, Nolting, Jacqueline M, Bowman, Andrew S
Published in Journal of virology (23.11.2020)
Published in Journal of virology (23.11.2020)
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Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants
Welch, Nicole L., Zhu, Meilin, Hua, Catherine, Weller, Juliane, Mirhashemi, Marzieh Ezzaty, Nguyen, Tien G., Mantena, Sreekar, Bauer, Matthew R., Shaw, Bennett M., Ackerman, Cheri M., Thakku, Sri Gowtham, Tse, Megan W., Kehe, Jared, Uwera, Marie-Martine, Eversley, Jacqueline S., Bielwaski, Derek A., McGrath, Graham, Braidt, Joseph, Johnson, Jeremy, Cerrato, Felecia, Moreno, Gage K., Krasilnikova, Lydia A., Petros, Brittany A., Gionet, Gabrielle L., King, Ewa, Huard, Richard C., Jalbert, Samantha K., Cleary, Michael L., Fitzgerald, Nicholas A., Gabriel, Stacey B., Gallagher, Glen R., Smole, Sandra C., Madoff, Lawrence C., Brown, Catherine M., Keller, Matthew W., Wilson, Malania M., Kirby, Marie K., Barnes, John R., Park, Daniel J., Siddle, Katherine J., Happi, Christian T., Hung, Deborah T., Springer, Michael, MacInnis, Bronwyn L., Lemieux, Jacob E., Rosenberg, Eric, Branda, John A., Blainey, Paul C., Sabeti, Pardis C., Myhrvold, Cameron
Published in Nature medicine (2024)
Published in Nature medicine (2024)
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Clinical Validation and Implementation of a Targeted Next-Generation Sequencing Assay to Detect Somatic Variants in Non-Small Cell Lung, Melanoma, and Gastrointestinal Malignancies
Fisher, Kevin E, Zhang, Linsheng, Wang, Jason, Smith, Geoffrey H, Newman, Scott, Schneider, Thomas M, Pillai, Rathi N, Kudchadkar, Ragini R, Owonikoko, Taofeek K, Ramalingam, Suresh S, Lawson, David H, Delman, Keith A, El-Rayes, Bassel F, Wilson, Malania M, Sullivan, H. Clifford, Morrison, Annie S, Balci, Serdar, Adsay, N. Volkan, Gal, Anthony A, Sica, Gabriel L, Saxe, Debra F, Mann, Karen P, Hill, Charles E, Khuri, Fadlo R, Rossi, Michael R
Published in The Journal of molecular diagnostics : JMD (01.03.2016)
Published in The Journal of molecular diagnostics : JMD (01.03.2016)
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In‐field detection and characterization of B/Victoria lineage deletion variant viruses causing early influenza activity and an outbreak in Louisiana, 2019
Shu, Bo, Wilson, Malania M., Keller, Matthew W., Tran, Ha, Sokol, Theresa, Lee, Grace, Rambo‐Martin, Benjamin L., Kirby, Marie K., Hassell, Norman, Haydel, Danielle, Hand, Julie, Wentworth, David E., Barnes, John R.
Published in Influenza and other respiratory viruses (01.01.2024)
Published in Influenza and other respiratory viruses (01.01.2024)
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Detection and discrimination of influenza B Victoria lineage deletion variant viruses by real-time RT-PCR
Shu, Bo, Kirby, Marie K, Warnes, Christine, Sessions, Wendy M, Davis, William G, Liu, Ji, Wilson, Malania M, Lindstrom, Stephen, Wentworth, David E, Barnes, John R
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (15.10.2020)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (15.10.2020)
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Influenza A Virus Field Surveillance at a Swine-Human Interface
Rambo-Martin, Benjamin L, Keller, Matthew W, Wilson, Malania M, Nolting, Jacqueline M, Anderson, Tavis K, Vincent, Amy L, Bagal, Ujwal R, Jang, Yunho, Neuhaus, Elizabeth B, Davis, C Todd, Bowman, Andrew S, Wentworth, David E, Barnes, John R
Published in mSphere (05.02.2020)
Published in mSphere (05.02.2020)
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Targeted amplification and genetic sequencing of the severe acute respiratory syndrome coronavirus 2 surface glycoprotein
Keller, Matthew W, Keong, Lisa M, Rambo-Martin, Benjamin L, Hassell, Norman, Lacek, Kristine A, Wilson, Malania M, Kirby, Marie K, Liddell, Jimma, Owuor, D Collins, Sheth, Mili, Madden, Joseph, Lee, Justin S, Kondor, Rebecca J, Wentworth, David E, Barnes, John R
Published in Microbiology spectrum (11.01.2024)
Published in Microbiology spectrum (11.01.2024)
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Author Correction: Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome
Keller, Matthew W., Rambo-Martin, Benjamin L., Wilson, Malania M., Ridenour, Callie A., Shepard, Samuel S., Stark, Thomas J., Neuhaus, Elizabeth B., Dugan, Vivien G., Wentworth, David E., Barnes, John R.
Published in Scientific reports (19.10.2018)
Published in Scientific reports (19.10.2018)
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Alcohol, Smoking, and Caffeine in Relation to Fecundability, with Effect Modification by NAT2
Taylor, Kira C., PhD, Small, Chanley M., PhD, Dominguez, Celia E., MD, Murray, Lauren E., MPH, Tang, Weining, PhD, Wilson, Malania M., MS, Bouzyk, Mark, PhD, Marcus, Michele, PhD
Published in Annals of epidemiology (01.11.2011)
Published in Annals of epidemiology (01.11.2011)
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DNA extraction from formalin-fixed, paraffin-embedded tissue
Tang, Weining, David, Freedom B, Wilson, Malania M, Barwick, Benjamin G, Leyland-Jones, Brian R, Bouzyk, Mark M
Published in Cold Spring Harbor protocols (01.02.2009)
Published in Cold Spring Harbor protocols (01.02.2009)
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