Ecogenomics: using massively parallel pyrosequencing to understand virus ecology
ROOSSINCK, MARILYN J., SAHA, PRASENJIT, WILEY, GRAHAM B., QUAN, JIAXI, WHITE, JAMES D., LAI, HONGSHING, CHAVARRÍA, FELIPE, SHEN, GUOAN, ROE, BRUCE A.
Published in Molecular ecology (01.03.2010)
Published in Molecular ecology (01.03.2010)
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RBPJ Mutations Identified in Two Families Affected by Adams-Oliver Syndrome
Hassed, Susan J., Wiley, Graham B., Wang, Shaofeng, Lee, Ji-Yun, Li, Shibo, Xu, Weihong, Zhao, Zhizhuang J., Mulvihill, John J., Robertson, James, Warner, James, Gaffney, Patrick M.
Published in American journal of human genetics (10.08.2012)
Published in American journal of human genetics (10.08.2012)
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Enhancer histone-QTLs are enriched on autoimmune risk haplotypes and influence gene expression within chromatin networks
Pelikan, Richard C, Kelly, Jennifer A, Fu, Yao, Lareau, Caleb A, Tessneer, Kandice L, Wiley, Graham B, Wiley, Mandi M, Glenn, Stuart B, Harley, John B, Guthridge, Joel M, James, Judith A, Aryee, Martin J, Montgomery, Courtney, Gaffney, Patrick M
Published in Nature communications (25.07.2018)
Published in Nature communications (25.07.2018)
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Regulatory polymorphisms modulate the expression of HLA class II molecules and promote autoimmunity
Raj, Prithvi, Rai, Ekta, Song, Ran, Khan, Shaheen, Wakeland, Benjamin E, Viswanathan, Kasthuribai, Arana, Carlos, Liang, Chaoying, Zhang, Bo, Dozmorov, Igor, Carr-Johnson, Ferdicia, Mitrovic, Mitja, Wiley, Graham B, Kelly, Jennifer A, Lauwerys, Bernard R, Olsen, Nancy J, Cotsapas, Chris, Garcia, Christine K, Wise, Carol A, Harley, John B, Nath, Swapan K, James, Judith A, Jacob, Chaim O, Tsao, Betty P, Pasare, Chandrashekhar, Karp, David R, Li, Quan Zhen, Gaffney, Patrick M, Wakeland, Edward K
Published in eLife (15.02.2016)
Published in eLife (15.02.2016)
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Cloning, characterization and expression analysis of porcine microRNAs
Reddy, Alavala Matta, Zheng, Yun, Jagadeeswaran, Guru, Macmil, Simone L, Graham, Wiley B, Roe, Bruce A, Desilva, Udaya, Zhang, Weixiong, Sunkar, Ramanjulu
Published in BMC genomics (05.02.2009)
Published in BMC genomics (05.02.2009)
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
Satou, Yutaka, Mineta, Katsuhiko, Ogasawara, Michio, Sasakura, Yasunori, Shoguchi, Eiichi, Ueno, Keisuke, Yamada, Lixy, Matsumoto, Jun, Wasserscheid, Jessica, Dewar, Ken, Wiley, Graham B, Macmil, Simone L, Roe, Bruce A, Zeller, Robert W, Hastings, Kenneth E M, Lemaire, Patrick, Lindquist, Erika, Endo, Toshinori, Hotta, Kohji, Inaba, Kazuo
Published in Genome Biology (14.10.2008)
Published in Genome Biology (14.10.2008)
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Forward genetic screening identifies a small molecule that blocks Toxoplasma gondii growth by inhibiting both host- and parasite-encoded kinases
Brown, Kevin M, Suvorova, Elena, Farrell, Andrew, McLain, Aaron, Dittmar, Ashley, Wiley, Graham B, Marth, Gabor, Gaffney, Patrick M, Gubbels, Marc Jan, White, Michael, Blader, Ira J
Published in PLoS pathogens (01.06.2014)
Published in PLoS pathogens (01.06.2014)
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The genomics of autoimmune disease in the era of genome-wide association studies and beyond
Lessard, Christopher J, Ice, John A, Adrianto, Indra, Wiley, Graham B, Kelly, Jennifer A, Gaffney, Patrick M, Montgomery, Courtney G, Moser, Kathy L
Published in Autoimmunity reviews (01.02.2012)
Published in Autoimmunity reviews (01.02.2012)
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The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571
Lee, Kyung-Bum, De Backer, Philippe, Aono, Toshihiro, Liu, Chi-Te, Suzuki, Shino, Suzuki, Tadahiro, Kaneko, Takakazu, Yamada, Manabu, Tabata, Satoshi, Kupfer, Doris M, Najar, Fares Z, Wiley, Graham B, Roe, Bruce, Binnewies, Tim T, Ussery, David W, D'Haeze, Wim, Herder, Jeroen Den, Gevers, Dirk, Vereecke, Danny, Holsters, Marcelle, Oyaizu, Hiroshi
Published in BMC genomics (04.06.2008)
Published in BMC genomics (04.06.2008)
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High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: alternative expression modes and gene function correlates
Matsumoto, Jun, Dewar, Ken, Wasserscheid, Jessica, Wiley, Graham B, Macmil, Simone L, Roe, Bruce A, Zeller, Robert W, Satou, Yutaka, Hastings, Kenneth E M
Published in Genome research (01.05.2010)
Published in Genome research (01.05.2010)
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Dysregulated long non-coding RNA in Sjögren’s disease impacts both interferon and adaptive immune responses
Joachims, Michelle L, Khatri, Bhuwan, Li, Chuang, Tessneer, Kandice L, Ice, John A, Stolarczyk, Anna M, Means, Nicolas, Grundahl, Kiely M, Glenn, Stuart B, Kelly, Jennifer A, Lewis, David M, Radfar, Lida, Stone, Donald U, Guthridge, Joel M, James, Judith A, Scofield, R Hal, Wiley, Graham B, Wren, Jonathan D, Gaffney, Patrick M, Montgomery, Courtney G, Sivils, Kathy L, Rasmussen, Astrid, Farris, A Darise, Adrianto, Indra, Lessard, Christopher J
Published in Rheumatic & musculoskeletal diseases open (01.11.2022)
Published in Rheumatic & musculoskeletal diseases open (01.11.2022)
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Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing
Choi, Jeong-Hyeon, Li, Yajun, Guo, Juyuan, Pei, Lirong, Rauch, Tibor A, Kramer, Robin S, Macmil, Simone L, Wiley, Graham B, Bennett, Lynda B, Schnabel, Jennifer L, Taylor, Kristen H, Kim, Sun, Xu, Dong, Sreekumar, Arun, Pfeifer, Gerd P, Roe, Bruce A, Caldwell, Charles W, Bhalla, Kapil N, Shi, Huidong
Published in PloS one (29.09.2010)
Published in PloS one (29.09.2010)
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BAC-Pool Sequencing and Analysis of Large Segments of A12 and D12 Homoeologous Chromosomes in Upland Cotton
Buyyarapu, Ramesh, Kantety, Ramesh V, Yu, John Z, Xu, Zhanyou, Kohel, Russell J, Percy, Richard G, Macmil, Simone, Wiley, Graham B, Roe, Bruce A, Sharma, Govind C, Wei, Zhi
Published in PloS one (08.10.2013)
Published in PloS one (08.10.2013)
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The Medicago genome provides insight into the evolution of rhizobial symbioses
Debellé, Frédéric, Oldroyd, Giles E D, Geurts, Rene, Benedito, Vagner A, Mayer, Klaus F X, Gouzy, Jérôme, Schoof, Heiko, Van de Peer, Yves, Proost, Sebastian, Cook, Douglas R, Spannagl, Manuel, De Mita, Stéphane, Krishnakumar, Vivek, Gundlach, Heidrun, Zhou, Shiguo, Mudge, Joann, Bharti, Arvind K, Murray, Jeremy D, Naoumkina, Marina A, Rosen, Benjamin, Silverstein, Kevin A T, Rombauts, Stephane, Zhao, Patrick X, Zhou, Peng, Barbe, Valérie, Bardou, Philippe, Bechner, Michael, Bellec, Arnaud, Berger, Anne, Bergès, Hélène, Bidwell, Shelby, Bisseling, Ton, Choisne, Nathalie, Couloux, Arnaud, Deshpande, Shweta, Dai, Xinbin, Doyle, Jeff J, Dudez, Anne-Marie, Farmer, Andrew D, Franken, Carolien, Goldstein, Steven, González, Alvaro J, Green, Pamela J, Hallab, Asis, Hartog, Marijke, Hua, Axin, Humphray, Sean J, Jeong, Dong-Hoon, Jing, Yi, Jöcker, Anika, Kenton, Steve M, Klee, Kathrin, Lai, Hongshing, Lin, Shaoping, Macmil, Simone L, Magdelenat, Ghislaine, Matthews, Lucy, McCorrison, Jamison, Najar, Fares Z, Nicholson, Christine, Noirot, Céline, Paule, Charles R, Prion, Florent, Qin, Baifang, Qu, Chunmei, Retzel, Ernest F, Riddle, Claire, Sallet, Erika, Samain, Sylvie, Samson, Nicolas, Saurat, Olivier, Scarpelli, Claude, Schiex, Thomas, Segurens, Béatrice, Sherrier, D Janine, Shi, Ruihua, Sims, Sarah, Singer, Susan R, Sinharoy, Senjuti, Sterck, Lieven, Viollet, Agnès, Wang, Bing-Bing, Wang, Keqin, Wang, Mingyi, Warfsmann, Jens, White, Doug D, White, Jim D, Wiley, Graham B, Wincker, Patrick, Yao, Ziyun, Zhai, Jixian, Zhou, Liping, Zuber, Antoine, Dénarié, Jean, Dixon, Richard A, May, Gregory D, Schwartz, David C, Quétier, Francis, Town, Christopher D, Roe, Bruce A
Published in Nature (London) (22.12.2011)
Published in Nature (London) (22.12.2011)
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Variants on the UBE2L3/YDJC Autoimmune Disease Risk Haplotype Increase UBE2L3 Expression by Modulating CCCTC‐Binding Factor and YY1 Binding
Gopalakrishnan, Jaanam, Tessneer, Kandice L., Fu, Yao, Pasula, Satish, Pelikan, Richard C., Kelly, Jennifer A., Wiley, Graham B., Gaffney, Patrick M.
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.01.2022)
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.01.2022)
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Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
Jagadeeswaran, Guru, Zheng, Yun, Li, Yong-Fang, Shukla, Lata I, Matts, Jessica, Hoyt, Peter, Macmil, Simone L, Wiley, Graham B, Roe, Bruce A, Zhang, Weixiong, Sunkar, Ramanjulu
Published in The New phytologist (01.10.2009)
Published in The New phytologist (01.10.2009)
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Role of Systemic Lupus Erythematosus Risk Variants With Opposing Functional Effects as a Driver of Hypomorphic Expression of TNIP1 and Other Genes Within a Three‐Dimensional Chromatin Network
Pasula, Satish, Tessneer, Kandice L., Fu, Yao, Gopalakrishnan, Jaanam, Pelikan, Richard C., Kelly, Jennifer A., Wiley, Graham B., Wiley, Mandi M., Gaffney, Patrick M.
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.05.2020)
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.05.2020)
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Identification of IRF8, TMEM39A, and IKZF3-ZPBP2 as Susceptibility Loci for Systemic Lupus Erythematosus in a Large-Scale Multiracial Replication Study
Lessard, Christopher J., Adrianto, Indra, Ice, John A., Wiley, Graham B., Kelly, Jennifer A., Glenn, Stuart B., Adler, Adam J., Li, He, Rasmussen, Astrid, Williams, Adrienne H., Ziegler, Julie, Comeau, Mary E., Marion, Miranda, Wakeland, Benjamin E., Liang, Chaoying, Ramos, Paula S., Grundahl, Kiely M., Gallant, Caroline J., Alarcón, Graciela S., Anaya, Juan-Manuel, Bae, Sang-Cheol, Boackle, Susan A., Brown, Elizabeth E., Chang, Deh-Ming, Cho, Soo-Kyung, Criswell, Lindsey A., Edberg, Jeffrey C., Freedman, Barry I., Gilkeson, Gary S., Jacob, Chaim O., James, Judith A., Kamen, Diane L., Kimberly, Robert P., Kim, Jae-Hoon, Martin, Javier, Merrill, Joan T., Niewold, Timothy B., Park, So-Yeon, Petri, Michelle A., Pons-Estel, Bernardo A., Ramsey-Goldman, Rosalind, Reveille, John D., Scofield, R. Hal, Song, Yeong Wook, Stevens, Anne M., Tsao, Betty P., Vila, Luis M., Vyse, Timothy J., Yu, Chack-Yung, Guthridge, Joel M., Kaufman, Kenneth M., Harley, John B., Wakeland, Edward K., Langefeld, Carl D., Gaffney, Patrick M., Montgomery, Courtney G., Moser, Kathy L.
Published in American journal of human genetics (06.04.2012)
Published in American journal of human genetics (06.04.2012)
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Single-cell analysis of glandular T cell receptors in Sjögren's syndrome
Joachims, Michelle L, Leehan, Kerry M, Lawrence, Christina, Pelikan, Richard C, Moore, Jacen S, Pan, Zijian, Rasmussen, Astrid, Radfar, Lida, Lewis, David M, Grundahl, Kiely M, Kelly, Jennifer A, Wiley, Graham B, Shugay, Mikhail, Chudakov, Dmitriy M, Lessard, Christopher J, Stone, Donald U, Scofield, R Hal, Montgomery, Courtney G, Sivils, Kathy L, Thompson, Linda F, Farris, A Darise
Published in JCI insight (02.06.2016)
Published in JCI insight (02.06.2016)
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