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Kjærbølling, Inge, Vesth, Tammi, Frisvad, Jens C., Nybo, Jane L., Theobald, Sebastian, Kildgaard, Sara, Petersen, Thomas Isbrandt, Kuo, Alan, Sato, Atsushi, Lyhne, Ellen K., Kogle, Martin E., Wiebenga, Ad, Kun, Roland S., Lubbers, Ronnie J. M., Mäkelä, Miia R., Barry, Kerrie, Chovatia, Mansi, Clum, Alicia, Daum, Chris, Haridas, Sajeet, He, Guifen, LaButti, Kurt, Lipzen, Anna, Mondo, Stephen, Pangilinan, Jasmyn, Riley, Robert, Salamov, Asaf, Simmons, Blake A., Magnuson, Jon K., Henrissat, Bernard, Mortensen, Uffe H., Larsen, Thomas O., de Vries, Ronald P., Grigoriev, Igor V., Machida, Masayuki, Baker, Scott E., Andersen, Mikael R.
Published in Nature communications (27.02.2020)
Published in Nature communications (27.02.2020)
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Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level
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Published in BMC genomics (17.01.2011)
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Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression
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Published in PloS one (18.11.2015)
Published in PloS one (18.11.2015)
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Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize
Suzuki, Hitoshi, MacDonald, Jacqueline, Syed, Khajamohiddin, Salamov, Asaf, Hori, Chiaki, Aerts, Andrea, Henrissat, Bernard, Wiebenga, Ad, VanKuyk, Patricia A, Barry, Kerrie, Lindquist, Erika, LaButti, Kurt, Lapidus, Alla, Lucas, Susan, Coutinho, Pedro, Gong, Yunchen, Samejima, Masahiro, Mahadevan, Radhakrishnan, Abou-Zaid, Mamdouh, de Vries, Ronald P, Igarashi, Kiyohiko, Yadav, Jagjit S, Grigoriev, Igor V, Master, Emma R
Published in BMC genomics (02.09.2012)
Published in BMC genomics (02.09.2012)
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Heterogeneity of Aspergillus niger Microcolonies in Liquid Shaken Cultures
de Bekker, Charissa, van Veluw, G. Jerre, Vinck, Arman, Wiebenga, L. Ad, Wösten, Han A.B
Published in Applied and Environmental Microbiology (01.02.2011)
Published in Applied and Environmental Microbiology (01.02.2011)
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Macroalgae Derived Fungi Have High Abilities to Degrade Algal Polymers
Patyshakuliyeva, Aleksandrina, Falkoski, Daniel L, Wiebenga, Ad, Timmermans, Klaas, Vries, Ronald P de
Published in Microorganisms (Basel) (26.12.2019)
Published in Microorganisms (Basel) (26.12.2019)
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Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales)
Urquhart, Andrew S, Mondo, Stephen J, Mäkelä, Miia R, Hane, James K, Wiebenga, Ad, He, Guifen, Mihaltcheva, Sirma, Pangilinan, Jasmyn, Lipzen, Anna, Barry, Kerrie, de Vries, Ronald P, Grigoriev, Igor V, Idnurm, Alexander
Published in Frontiers in microbiology (13.12.2018)
Published in Frontiers in microbiology (13.12.2018)
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
Khosravi, Claire, Kowalczyk, Joanna E, Chroumpi, Tania, Battaglia, Evy, Aguilar Pontes, Maria-Victoria, Peng, Mao, Wiebenga, Ad, Ng, Vivian, Lipzen, Anna, He, Guifen, Bauer, Diane, Grigoriev, Igor V, de Vries, Ronald P
Published in BMC genomics (14.11.2019)
Published in BMC genomics (14.11.2019)
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Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi
Li, Jiajia, Wiebenga, Ad, Lipzen, Anna, Ng, Vivian, Tejomurthula, Sravanthi, Zhang, Yu, Grigoriev, Igor V., Peng, Mao, de Vries, Ronald P.
Published in Journal of fungi (Basel) (18.08.2023)
Published in Journal of fungi (Basel) (18.08.2023)
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An enzyme cocktail for efficient protoplast formation in Aspergillus niger
de Bekker, Charissa, Wiebenga, Ad, Aguilar, Guillermo, Wösten, Han A.B.
Published in Journal of microbiological methods (01.03.2009)
Published in Journal of microbiological methods (01.03.2009)
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
Theobald, Sebastian, Vesth, Tammi C, Geib, Elena, Nybo, Jane L, Frisvad, Jens C, Larsen, Thomas O, Kuo, Alan, LaButti, Kurt, Lyhne, Ellen K, Kjærbølling, Inge, Ledsgaard, Line, Barry, Kerrie, Clum, Alicia, Chen, Cindy, Nolan, Matt, Sandor, Laura, Lipzen, Anna, Mondo, Stephen, Pangilinan, Jasmyn, Salamov, Asaf, Riley, Robert, Wiebenga, Ad, Müller, Astrid, Kun, Roland S, Dos Santos Gomes, Ana Carolina, Henrissat, Bernard, Magnuson, Jon K, Simmons, Blake A, Mäkelä, Miia R, Mortensen, Uffe H, Grigoriev, Igor V, Brock, Matthias, Baker, Scott E, de Vries, Ronald P, Andersen, Mikael R
Published in Journal of fungi (Basel) (22.07.2024)
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
Xu, Li, Li, Jiajia, Gonzalez Ramos, Victor M., Lyra, Christina, Wiebenga, Ad, Grigoriev, Igor V., de Vries, Ronald P., Mäkelä, Miia R., Peng, Mao
Published in Bioresource technology (10.11.2023)
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Published in Bioresource technology (10.11.2023)
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Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri
Vesth, Tammi C., Nybo, Jane L., Theobald, Sebastian, Frisvad, Jens C., Larsen, Thomas O., Nielsen, Kristian F., Hoof, Jakob B., Brandl, Julian, Salamov, Asaf, Riley, Robert, Gladden, John M., Phatale, Pallavi, Nielsen, Morten T., Lyhne, Ellen K., Kogle, Martin E., Strasser, Kimchi, McDonnell, Erin, Barry, Kerrie, Clum, Alicia, Chen, Cindy, LaButti, Kurt, Haridas, Sajeet, Nolan, Matt, Sandor, Laura, Kuo, Alan, Lipzen, Anna, Hainaut, Matthieu, Drula, Elodie, Tsang, Adrian, Magnuson, Jon K., Henrissat, Bernard, Wiebenga, Ad, Simmons, Blake A., Mäkelä, Miia R., de Vries, Ronald P., Grigoriev, Igor V., Mortensen, Uffe H., Baker, Scott E., Andersen, Mikael R.
Published in Nature genetics (01.12.2018)
Published in Nature genetics (01.12.2018)
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
Xu, Li, Li, Jiajia, Gonzalez Ramos, Victor M., Lyra, Christina, Wiebenga, Ad, Grigoriev, Igor V., de Vries, Ronald P., Mäkelä, Miia R., Peng, Mao
Published in Bioresource technology (01.01.2024)
Published in Bioresource technology (01.01.2024)
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The Plant Cell Wall—Decomposing Machinery Underlies the Functional Diversity of Forest Fungi
Eastwood, Daniel C., Floudas, Dimitrios, Binder, Manfred, Majcherczyk, Andrzej, Schneider, Patrick, Aerts, Andrea, Asiegbu, Fred O., Baker, Scott E., Barry, Kerrie, Bendiksby, Mika, Blumentritt, Melanie, Coutinho, Pedro M., Cullen, Dan, de Vries, Ronald P., Gathman, Allen, Goodell, Barry, Henrissat, Bernard, Ihrmark, Katarina, Kauserud, Hävard, Kohler, Annegret, LaButti, Kurt, Lapidus, Alla, Lavin, José L., Lee, Yong-Hwan, Lindquist, Erika, Lilly, Walt, Lucas, Susan, Morin, Emmanuelle, Murat, Claude, Oguiza, José A., Park, Jongsun, Pisabarro, Antonio G., Riley, Robert, Rosling, Anna, Salamov, Asaf, Schmidt, Olaf, Schmutz, Jeremy, Skrede, Inger, Stenlid, Jan, Wiebenga, Ad, Xie, Xinfeng, Kües, Ursula, Hibbett, David S., Hoffmeister, Dirk, Högberg, Nils, Martin, Francis, Grigoriev, Igor V., Watkinson, Sarah C.
Published in Science (American Association for the Advancement of Science) (05.08.2011)
Published in Science (American Association for the Advancement of Science) (05.08.2011)
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Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment
Veneault-Fourrey, Claire, Commun, Carine, Kohler, Annegret, Morin, Emmanuelle, Balestrini, Raffaella, Plett, Jonathan, Danchin, Etienne, Coutinho, Pedro, Wiebenga, Ad, de Vries, Ronald P., Henrissat, Bernard, Martin, Francis
Published in Fungal genetics and biology (01.11.2014)
Published in Fungal genetics and biology (01.11.2014)
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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis
Fernandez-Fueyo, Elena, Ruiz-Dueñas, Francisco J., Ferreira, Patricia, Floudas, Dimitrios, Hibbett, David S., Canessa, Paulo, Larrondo, Luis F., James, Tim Y., Seelenfreund, Daniela, Lobos, Sergio, Polanco, Rubén, Tello, Mario, Honda, Yoichi, Watanabe, Takahito, Watanabe, Takashi, San, Ryu Jae, Kubicek, Christian P., Schmoll, Monika, Gaskell, Jill, Hammel, Kenneth E., St. John, Franz J., Wymelenberg, Amber Vanden, Sabat, Grzegorz, BonDurant, Sandra Splinter, Syed, Khajamohiddin, Yadav, Jagjit S., Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Lavín, José L., Oguiza, José A., Perez, Gumer, Pisabarro, Antonio G., Ramirez, Lucia, Santoyo, Francisco, Master, Emma, Coutinho, Pedro M., Henrissat, Bernard, Lombard, Vincent, Magnuson, Jon Karl, Kües, Ursula, Hori, Chiaki, Igarashi, Kiyohiko, Samejima, Masahiro, Held, Benjamin W., Barry, Kerrie W., LaButti, Kurt M., Lapidus, Alla, Lindquist, Erika A., Lucas, Susan M., Riley, Robert, Salamov, Asaf A., Hoffmeister, Dirk, Schwenk, Daniel, Hadar, Yitzhak, Yarden, Oded, de Vries, Ronald P., Wiebenga, Ad, Stenlid, Jan, Eastwood, Daniel, Grigoriev, Igor V., Berka, Randy M., Blanchette, Robert A., Kersten, Phil, Martinez, Angel T., Vicuna, Rafael, Cullen, Dan
Published in Proceedings of the National Academy of Sciences - PNAS (03.04.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (03.04.2012)
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Insight into trade‐off between wood decay and parasitism from the genome of a fungal forest pathogen
Olson, Åke, Aerts, Andrea, Asiegbu, Fred, Belbahri, Lassaad, Bouzid, Ourdia, Broberg, Anders, Canbäck, Björn, Coutinho, Pedro M, Cullen, Dan, Dalman, Kerstin, Deflorio, Giuliana, van Diepen, Linda T.A, Dunand, Christophe, Duplessis, Sébastien, Durling, Mikael, Gonthier, Paolo, Grimwood, Jane, Fossdal, Carl Gunnar, Hansson, David, Henrissat, Bernard, Hietala, Ari, Himmelstrand, Kajsa, Hoffmeister, Dirk, Högberg, Nils, James, Timothy Y, Karlsson, Magnus, Kohler, Annegret, Kües, Ursula, Lee, Yong‐Hwan, Lin, Yao‐Cheng, Lind, Mårten, Lindquist, Erika, Lombard, Vincent, Lucas, Susan, Lundén, Karl, Morin, Emmanuelle, Murat, Claude, Park, Jongsun, Raffaello, Tommaso, Rouzé, Pierre, Salamov, Asaf, Schmutz, Jeremy, Solheim, Halvor, Ståhlberg, Jerry, Vélëz, Heriberto, de Vries, Ronald P, Wiebenga, Ad, Woodward, Steve, Yakovlev, Igor, Garbelotto, Matteo, Martin, Francis, Grigoriev, Igor V, Stenlid, Jan
Published in The New phytologist (01.06.2012)
Published in The New phytologist (01.06.2012)
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