Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Wick, Ryan R, Judd, Louise M, Gorrie, Claire L, Holt, Kathryn E
Published in PLoS computational biology (01.06.2017)
Published in PLoS computational biology (01.06.2017)
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Journal Article
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae
Wyres, Kelly L, Wick, Ryan R, Judd, Louise M, Froumine, Roni, Tokolyi, Alex, Gorrie, Claire L, Lam, Margaret M C, Duchêne, Sebastián, Jenney, Adam, Holt, Kathryn E
Published in PLoS genetics (15.04.2019)
Published in PLoS genetics (15.04.2019)
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Journal Article
Bandage: interactive visualization of de novo genome assemblies
Wick, Ryan R, Schultz, Mark B, Zobel, Justin, Holt, Kathryn E
Published in Bioinformatics (15.10.2015)
Published in Bioinformatics (15.10.2015)
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Journal Article
Trycycler: consensus long-read assemblies for bacterial genomes
Wick, Ryan R, Judd, Louise M, Cerdeira, Louise T, Hawkey, Jane, Méric, Guillaume, Vezina, Ben, Wyres, Kelly L, Holt, Kathryn E
Published in Genome Biology (14.09.2021)
Published in Genome Biology (14.09.2021)
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Journal Article
Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
Wick, Ryan R, Heinz, Eva, Holt, Kathryn E, Wyres, Kelly L
Published in Journal of clinical microbiology (01.06.2018)
Published in Journal of clinical microbiology (01.06.2018)
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Journal Article
Completing bacterial genome assemblies with multiplex MinION sequencing
Wick, Ryan R, Judd, Louise M, Gorrie, Claire L, Holt, Kathryn E
Published in Microbial genomics (01.10.2017)
Published in Microbial genomics (01.10.2017)
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Journal Article
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients
Gorrie, Claire L., Mirčeta, Mirjana, Wick, Ryan R., Edwards, David J., Thomson, Nicholas R., Strugnell, Richard A., Pratt, Nigel F., Garlick, Jill S., Watson, Kerri M., Pilcher, David V., McGloughlin, Steve A., Spelman, Denis W., Jenney, Adam W. J., Holt, Kathryn E.
Published in Clinical infectious diseases (15.07.2017)
Published in Clinical infectious diseases (15.07.2017)
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Journal Article
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
Lam, Margaret M C, Wyres, Kelly L, Duchêne, Sebastian, Wick, Ryan R, Judd, Louise M, Gan, Yunn-Hwen, Hoh, Chu-Han, Archuleta, Sophia, Molton, James S, Kalimuddin, Shirin, Koh, Tse Hsien, Passet, Virginie, Brisse, Sylvain, Holt, Kathryn E
Published in Nature communications (13.07.2018)
Published in Nature communications (13.07.2018)
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Journal Article
Identification of Klebsiella capsule synthesis loci from whole genome data
Wyres, Kelly L, Wick, Ryan R, Gorrie, Claire, Jenney, Adam, Follador, Rainer, Thomson, Nicholas R, Holt, Kathryn E
Published in Microbial genomics (01.12.2016)
Published in Microbial genomics (01.12.2016)
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Journal Article
Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307
Wyres, Kelly L, Hawkey, Jane, Hetland, Marit A K, Fostervold, Aasmund, Wick, Ryan R, Judd, Louise M, Hamidian, Mohammad, Howden, Benjamin P, Löhr, Iren H, Holt, Kathryn E
Published in Journal of antimicrobial chemotherapy (01.03.2019)
Published in Journal of antimicrobial chemotherapy (01.03.2019)
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Journal Article
Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15
Lam, Margaret M C, Wyres, Kelly L, Wick, Ryan R, Judd, Louise M, Fostervold, Aasmund, Holt, Kathryn E, Löhr, Iren Høyland
Published in Journal of antimicrobial chemotherapy (01.05.2019)
Published in Journal of antimicrobial chemotherapy (01.05.2019)
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Journal Article
Silent spread of mobile colistin resistance gene mcr-9.1 on IncHI2 ‘superplasmids’ in clinical carbapenem-resistant Enterobacterales
Macesic, Nenad, Blakeway, Luke V., Stewart, James D., Hawkey, Jane, Wyres, Kelly L., Judd, Louise M., Wick, Ryan R., Jenney, Adam W., Holt, Kathryn E., Peleg, Anton Y.
Published in Clinical microbiology and infection (01.12.2021)
Published in Clinical microbiology and infection (01.12.2021)
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Journal Article
Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen
Gorrie, Claire L, Mirčeta, Mirjana, Wick, Ryan R, Judd, Louise M, Lam, Margaret M C, Gomi, Ryota, Abbott, Iain J, Thomson, Nicholas R, Strugnell, Richard A, Pratt, Nigel F, Garlick, Jill S, Watson, Kerrie M, Hunter, Peter C, Pilcher, David V, McGloughlin, Steve A, Spelman, Denis W, Wyres, Kelly L, Jenney, Adam W J, Holt, Kathryn E
Published in Nature communications (31.05.2022)
Published in Nature communications (31.05.2022)
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