Mumps epidemic dynamics in the United States before vaccination (1923–1932)
Pomeroy, Laura W., Magsi, Senya, McGill, Shannon, Wheeler, Caroline E.
Published in Epidemics (01.09.2023)
Published in Epidemics (01.09.2023)
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Journal Article
Exogenous Sequences in Tumors and Immune Cells (Exotic): A Tool for Estimating the Microbe Abundances in Tumor RNA-seq Data
Hoyd, Rebecca, Wheeler, Caroline E, Liu, YunZhou, Jagjit Singh, Malvenderjit S, Muniak, Mitchell, Jin, Ning, Denko, Nicholas C, Carbone, David P, Mo, Xiaokui, Spakowicz, Daniel J
Published in Cancer research communications (21.11.2023)
Published in Cancer research communications (21.11.2023)
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Journal Article
The tumor microbiome reacts to hypoxia and can influence response to radiation treatment in colorectal cancer
Benej, Martin, Hoyd, Rebecca, Kreamer, McKenzie, Wheeler, Caroline E, Grencewicz, Dennis J, Choueiry, Fouad, Chan, Carlos H F, Zakharia, Yousef, Ma, Qin, Dodd, Rebecca D, Ulrich, Cornelia M, Hardikar, Sheetal, Churchman, Michelle L, Tarhini, Ahmad A, Robinson, Lary A, Singer, Eric A, Ikeguchi, Alexandra P, McCarter, Martin D, Tinoco, Gabriel, Husain, Marium, Jin, Ning, Tan, Aik Choon, Osman, Afaf E G, Eljilany, Islam, Riedlinger, Gregory, Schneider, Bryan P, Benejova, Katarina, Kery, Martin, Papandreou, Ioanna, Zhu, Jiangjiang, Denko, Nicholas, Spakowicz, Daniel
Published in Cancer research communications (01.07.2024)
Published in Cancer research communications (01.07.2024)
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Journal Article
A Bioinformatics Tool for Identifying Intratumoral Microbes from the ORIEN Dataset
Wang, Cankun, Ma, Anjun, Li, Yingjie, McNutt, Megan E, Zhang, Shiqi, Zhu, Jiangjiang, Hoyd, Rebecca, Wheeler, Caroline E, Robinson, Lary A, Chan, Carlos H F, Zakharia, Yousef, Dodd, Rebecca D, Ulrich, Cornelia M, Hardikar, Sheetal, Churchman, Michelle L, Tarhini, Ahmad A, Singer, Eric A, Ikeguchi, Alexandra P, McCarter, Martin D, Denko, Nicholas, Tinoco, Gabriel, Husain, Marium, Jin, Ning, Osman, Afaf E G, Eljilany, Islam, Tan, Aik Choon, Coleman, Samuel S, Denko, Louis, Riedlinger, Gregory, Schneider, Bryan P, Spakowicz, Daniel, Ma, Qin
Published in Cancer research communications (05.02.2024)
Published in Cancer research communications (05.02.2024)
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Journal Article
The tumor microbiome as a predictor of outcomes in patients with metastatic melanoma treated with immune checkpoint inhibitors
Wheeler, Caroline E, Coleman, 4th, Samuel S, Hoyd, Rebecca, Denko, Louis, Chan, Carlos H F, Churchman, Michelle L, Denko, Nicholas, Dodd, Rebecca D, Eljilany, Islam, Hardikar, Sheetal, Husain, Marium, Ikeguchi, Alexandra P, Jin, Ning, Ma, Qin, McCarter, Martin D, Osman, Afaf E G, Robinson, Lary A, Singer, Eric A, Tinoco, Gabriel, Ulrich, Cornelia M, Zakharia, Yousef, Spakowicz, Daniel, Tarhini, Ahmad A, Tan, Aik Choon
Published in bioRxiv (25.05.2023)
Published in bioRxiv (25.05.2023)
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Journal Article
A bioinformatics tool for identifying intratumoral microbes from the ORIEN dataset
Wang, Cankun, Ma, Anjun, McNutt, Megan E, Hoyd, Rebecca, Wheeler, Caroline E, Robinson, Lary A, Chan, Carlos H F, Zakharia, Yousef, Dodd, Rebecca D, Ulrich, Cornelia M, Hardikar, Sheetal, Churchman, Michelle L, Tarhini, Ahmad A, Singer, Eric A, Ikeguchi, Alexandra P, McCarter, Martin D, Denko, Nicholas, Tinoco, Gabriel, Husain, Marium, Jin, Ning, Osman, Afaf E G, Eljilany, Islam, Tan, Aik Choon, Coleman, 4th, Samuel S, Denko, Louis, Riedlinger, Gregory, Schneider, Bryan P, Spakowicz, Daniel, Ma, Qin
Published in bioRxiv (24.05.2023)
Published in bioRxiv (24.05.2023)
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Journal Article
Pan-cancer analysis of exogenous (microbial) sequences in tumor transcriptome data from the ORIEN consortium and their association with cancer and tumor microenvironment
Spakowicz, Daniel, Hoyd, Rebecca, Wheeler, Caroline E., Zakharia, Yousef, Dodd, Rebecca D., Ose, Jennifer, Hardikar, Sheetal, Tarhini, Ahmad A., Robinson, Lary A., Singer, Eric A., Carpten, John D., Chan, Carlos Hou Fai, Ikeguchi, Alexandra, Ulrich, Cornelia M, McCarter, Martin
Published in Journal of clinical oncology (01.06.2022)
Published in Journal of clinical oncology (01.06.2022)
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Journal Article
The effect of the microbiome on immune checkpoint inhibitor toxicity in patients with melanoma
Williams, Nyelia, Hoyd, Rebecca, Wheeler, Caroline E., Lynn, Mari, Bibi, Amna, Gray, Shannon, Bodner, Michael, Arya, Namrata, Roberts, Scott, Hoang, Phuong, Apparicio, Jessica, Merrill, Deanna, Wu, Richard Cheng Han, Verschraegen, Claire F., Burd, Christin Elizabeth, Kendra, Kari Lynn, Spakowicz, Daniel
Published in Journal of clinical oncology (01.06.2022)
Published in Journal of clinical oncology (01.06.2022)
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Journal Article
De-correlating immune checkpoint inhibitor toxicity and response in melanoma via the microbiome
Williams, Nyelia, Wheeler, Caroline E., Husain, Marium, Hoyd, Rebecca, Meara, Alexa Simon, Lynn, Mari, Bibi, Amna, Conrad, Bailey, Gray, Shannon, Bodnar, Michael, Arya, Namrata, Roberts, Scott, Hoang, Phuong, Apparicio, Jessica, Merrill, Deanna, Wu, Richard Cheng Han, Verschraegen, Claire F., Burd, Christin Elizabeth, Kendra, Kari Lynn, Spakowicz, Daniel
Published in Journal of clinical oncology (01.06.2023)
Published in Journal of clinical oncology (01.06.2023)
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Journal Article
Abstract 5904: Intra-tumor microbes identified by RNAseq associated with response to immune checkpoint blockade in metastatic melanoma
Wheeler, Caroline E., Coleman, Samuel, Hoyd, Rebecca, Osman, Afaf, Denko, Louis, Tan, Aik Choon, Spakowicz, Daniel, Tarhini, Ahmad
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Abstract A021: Older adult-specific microbes correlate with treatment response and markers of T-cell senescence in NSCLC
Spakowicz, Daniel, Hoyd, Rebecca, Wheeler, Caroline E., Williams, Nyelia, Bibi, Amna, Husain, Marium, Rajamouli, Srichandhana, Suman, Shankar, Amann, Joseph, Grogan, Madison, Vibhakar, Pooja, Owen, Dwight H., Carbone, David P., Rosko, Ashley, Burd, Christin E., Presley, Carolyn J.
Published in Cancer research (Chicago, Ill.) (15.01.2023)
Published in Cancer research (Chicago, Ill.) (15.01.2023)
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Journal Article
Abstract PR004: Older adult-specific microbes correlate with treatment response and markers of T-cell senescence in NSCLC
Spakowicz, Daniel, Hoyd, Rebecca, Wheeler, Caroline E., Williams, Nyelia, Bibi, Amna, Husain, Marium, Rajamouli, Srichandhana, Suman, Shankar, Amann, Joseph, Grogan, Madison, Vibhakar, Pooja, Owen, Dwight H., Carbone, David P., Rosko, Ashley, Burd, Christin E., Presley, Carolyn J.
Published in Cancer research (Chicago, Ill.) (15.01.2023)
Published in Cancer research (Chicago, Ill.) (15.01.2023)
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Journal Article
Abstract 7615: Epithelial-mesenchymal-transition gene signature changes and poor oncological outcome in Candida -positive pancreatic ductal adenocarcinoma
Ear, Po Hien, Hu, Min, Shilyansky, Jonathan S., Fei, Naomi H., Coleman, Sam, Hoyd, Rebecca, Wheeler, Caroline E., Steckly, Kelsey L., Churchman, Michelle L., Denko, Nicholas, Dodd, Rebecca D., Hardikar, Sheetal, Jin, Ning, Ma, Qin, McCarter, Martin D., Naqash, Abdul Rafeh, Osman, Afaf E., Riedlinger, Gregory, Robinson, Lary A., Schneider, Bryan P., Singer, Eric A., Tarhini, Ahmad A., Tinoco, Gabriel, Ulrich, Cornelia M., Zakharia, Yousef, Spakowicz, Daniel, Tan, Aik Choon, Chan, Carlos H.
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Journal Article
Abstract 5907: The tumor microbiome associates with features of the tumor microenvironment, treatment outcomes, and histologies: A national collaboration of the exORIEN Consortium
Hoyd, Rebecca, Wheeler, Caroline E., Coleman, Samuel, Denko, Louis, Chan, Carlos, Zakharia, Yousef, Dodd, Rebecca, Ulrich, Cornelia M., Hardikar, Sheetal, Ose, Jennifer, Churchman, Michelle, Tarhini, Ahmad, Robinson, Lary A., Singer, Eric, Ikeguchi, Alexandra P., McCarter, Martin, Anderson, Kyra, Carpten, John, Tinoco, Gabriel, Hussain, Marium, Denko, Nicolas, Liu, YunZhou, Jin, Ning, Kim, Youngchul, Masson, Asgeir, Fei, Naomi, Benej, Martin, Kreamer, McKenzie, Grencewicz, Dennis Dennis, Hussein, Ahmed, Tan, Aik Choon, Spakowicz, Daniel
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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