A Chromatin Accessibility Atlas of the Developing Human Telencephalon
Markenscoff-Papadimitriou, Eirene, Whalen, Sean, Przytycki, Pawel, Thomas, Reuben, Binyameen, Fadya, Nowakowski, Tomasz J., Kriegstein, Arnold R., Sanders, Stephan J., State, Matthew W., Pollard, Katherine S., Rubenstein, John L.
Published in Cell (06.08.2020)
Published in Cell (06.08.2020)
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Analysis of Transcriptional Variability in a Large Human iPSC Library Reveals Genetic and Non-genetic Determinants of Heterogeneity
Carcamo-Orive, Ivan, Hoffman, Gabriel E., Cundiff, Paige, Beckmann, Noam D., D’Souza, Sunita L., Knowles, Joshua W., Patel, Achchhe, Papatsenko, Dimitri, Abbasi, Fahim, Reaven, Gerald M., Whalen, Sean, Lee, Philip, Shahbazi, Mohammad, Henrion, Marc Y.R., Zhu, Kuixi, Wang, Sven, Roussos, Panos, Schadt, Eric E., Pandey, Gaurav, Chang, Rui, Quertermous, Thomas, Lemischka, Ihor
Published in Cell stem cell (06.04.2017)
Published in Cell stem cell (06.04.2017)
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Machine learning dissection of human accelerated regions in primate neurodevelopment
Whalen, Sean, Inoue, Fumitaka, Ryu, Hane, Fair, Tyler, Markenscoff-Papadimitriou, Eirene, Keough, Kathleen, Kircher, Martin, Martin, Beth, Alvarado, Beatriz, Elor, Orry, Laboy Cintron, Dianne, Williams, Alex, Hassan Samee, Md. Abul, Thomas, Sean, Krencik, Robert, Ullian, Erik M., Kriegstein, Arnold, Rubenstein, John L., Shendure, Jay, Pollen, Alex A., Ahituv, Nadav, Pollard, Katherine S.
Published in Neuron (Cambridge, Mass.) (15.03.2023)
Published in Neuron (Cambridge, Mass.) (15.03.2023)
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lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements
Gordon, M Grace, Inoue, Fumitaka, Martin, Beth, Schubach, Max, Agarwal, Vikram, Whalen, Sean, Feng, Shiyun, Zhao, Jingjing, Ashuach, Tal, Ziffra, Ryan, Kreimer, Anat, Georgakopoulos-Soares, Ilias, Yosef, Nir, Ye, Chun Jimmie, Pollard, Katherine S, Shendure, Jay, Kircher, Martin, Ahituv, Nadav
Published in Nature protocols (01.08.2020)
Published in Nature protocols (01.08.2020)
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An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype
Shah, Parisha P, Keough, Kathleen C, Gjoni, Ketrin, Santini, Garrett T, Abdill, Richard J, Wickramasinghe, Nadeera M, Dundes, Carolyn E, Karnay, Ashley, Chen, Angela, Salomon, Rachel E A, Walsh, Patrick J, Nguyen, Son C, Whalen, Sean, Joyce, Eric F, Loh, Kyle M, Dubois, Nicole, Pollard, Katherine S, Jain, Rajan
Published in Genome Biology (23.01.2023)
Published in Genome Biology (23.01.2023)
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Association of P-Wave Axis With Incident Atrial Fibrillation in Diabetes Mellitus (from the ACCORD Trial)
Dhaliwal, Karanpreet K., Upadhya, Bharathi, Soliman, Elsayed Z., Beaty, Elijah H., Yeboah, Joseph, Bhave, Prashant D., Whalen, Sean P., Singleton, Matthew J.
Published in The American journal of cardiology (01.08.2020)
Published in The American journal of cardiology (01.08.2020)
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Autism risk gene POGZ promotes chromatin accessibility and expression of clustered synaptic genes
Markenscoff-Papadimitriou, Eirene, Binyameen, Fadya, Whalen, Sean, Price, James, Lim, Kenneth, Ypsilanti, Athena R., Catta-Preta, Rinaldo, Pai, Emily Ling-Lin, Mu, Xin, Xu, Duan, Pollard, Katherine S., Nord, Alex S., State, Matthew W., Rubenstein, John L.
Published in Cell reports (Cambridge) (07.12.2021)
Published in Cell reports (Cambridge) (07.12.2021)
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The Epstein-Barr Virus Episome Maneuvers between Nuclear Chromatin Compartments during Reactivation
Moquin, Stephanie A, Thomas, Sean, Whalen, Sean, Warburton, Alix, Fernandez, Samantha G, McBride, Alison A, Pollard, Katherine S, Miranda, Jj L
Published in Journal of virology (01.02.2018)
Published in Journal of virology (01.02.2018)
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AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design
Keough, Kathleen C, Lyalina, Svetlana, Olvera, Michael P, Whalen, Sean, Conklin, Bruce R, Pollard, Katherine S
Published in Genome Biology (15.08.2019)
Published in Genome Biology (15.08.2019)
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Abduction and external rotation in shoulder impingement: an open MR study on healthy volunteers initial experience
Gold, Garry E, Pappas, George P, Blemker, Silvia S, Whalen, Sean T, Campbell, Gordon, McAdams, Timothy A, Beaulieu, Christopher F
Published in Radiology (01.09.2007)
Published in Radiology (01.09.2007)
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Navigating the pitfalls of applying machine learning in genomics
Whalen, Sean, Schreiber, Jacob, Noble, William S, Pollard, Katherine S
Published in Nature reviews. Genetics (01.03.2022)
Published in Nature reviews. Genetics (01.03.2022)
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The glycan CA19-9 promotes pancreatitis and pancreatic cancer in mice
Engle, Dannielle D, Tiriac, Hervé, Rivera, Keith D, Pommier, Arnaud, Whalen, Sean, Oni, Tobiloba E, Alagesan, Brinda, Lee, Eun Jung, Yao, Melissa A, Lucito, Matthew S, Spielman, Benjamin, Da Silva, Brandon, Schoepfer, Christina, Wright, Kevin, Creighton, Brianna, Afinowicz, Lauren, Yu, Kenneth H, Grützmann, Robert, Aust, Daniela, Gimotty, Phyllis A, Pollard, Katherine S, Hruban, Ralph H, Goggins, Michael G, Pilarsky, Christian, Park, Youngkyu, Pappin, Darryl J, Hollingsworth, Michael A, Tuveson, David A
Published in Science (American Association for the Advancement of Science) (21.06.2019)
Published in Science (American Association for the Advancement of Science) (21.06.2019)
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