Genome-wide identification of bacterial plant colonization genes
Cole, Benjamin J, Feltcher, Meghan E, Waters, Robert J, Wetmore, Kelly M, Mucyn, Tatiana S, Ryan, Elizabeth M, Wang, Gaoyan, Ul-Hasan, Sabah, McDonald, Meredith, Yoshikuni, Yasuo, Malmstrom, Rex R, Deutschbauer, Adam M, Dangl, Jeffery L, Visel, Axel
Published in PLoS biology (22.09.2017)
Published in PLoS biology (22.09.2017)
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Journal Article
Quantifying the local adaptive landscape of a nascent bacterial community
Ascensao, Joao A., Wetmore, Kelly M., Good, Benjamin H., Arkin, Adam P., Hallatschek, Oskar
Published in Nature communications (16.01.2023)
Published in Nature communications (16.01.2023)
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Journal Article
Mutant phenotypes for thousands of bacterial genes of unknown function
Price, Morgan N., Wetmore, Kelly M., Waters, R. Jordan, Callaghan, Mark, Ray, Jayashree, Liu, Hualan, Kuehl, Jennifer V., Melnyk, Ryan A., Lamson, Jacob S., Suh, Yumi, Carlson, Hans K., Esquivel, Zuelma, Sadeeshkumar, Harini, Chakraborty, Romy, Zane, Grant M., Rubin, Benjamin E., Wall, Judy D., Visel, Axel, Bristow, James, Blow, Matthew J., Arkin, Adam P., Deutschbauer, Adam M.
Published in Nature (London) (01.05.2018)
Published in Nature (London) (01.05.2018)
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Journal Article
The essential gene set of a photosynthetic organism
Rubin, Benjamin E., Wetmore, Kelly M., Price, Morgan N., Diamond, Spencer, Shultzaberger, Ryan K., Lowe, Laura C., Curtin, Genevieve, Arkin, Adam P., Deutschbauer, Adam, Golden, Susan S.
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (01.12.2015)
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Journal Article
Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons
Wetmore, Kelly M, Price, Morgan N, Waters, Robert J, Lamson, Jacob S, He, Jennifer, Hoover, Cindi A, Blow, Matthew J, Bristow, James, Butland, Gareth, Arkin, Adam P, Deutschbauer, Adam
Published in mBio (12.05.2015)
Published in mBio (12.05.2015)
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Journal Article
Rediversification following ecotype isolation reveals hidden adaptive potential
Ascensao, Joao A., Denk, Jonas, Lok, Kristen, Yu, QinQin, Wetmore, Kelly M., Hallatschek, Oskar
Published in Current biology (26.02.2024)
Published in Current biology (26.02.2024)
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Journal Article
Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions
Deutschbauer, Adam, Price, Morgan N, Wetmore, Kelly M, Shao, Wenjun, Baumohl, Jason K, Xu, Zhuchen, Nguyen, Michelle, Tamse, Raquel, Davis, Ronald W, Arkin, Adam P
Published in PLoS genetics (01.11.2011)
Published in PLoS genetics (01.11.2011)
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Journal Article
The Epigenomic Landscape of Prokaryotes
Blow, Matthew J, Clark, Tyson A, Daum, Chris G, Deutschbauer, Adam M, Fomenkov, Alexey, Fries, Roxanne, Froula, Jeff, Kang, Dongwan D, Malmstrom, Rex R, Morgan, Richard D, Posfai, Janos, Singh, Kanwar, Visel, Axel, Wetmore, Kelly, Zhao, Zhiying, Rubin, Edward M, Korlach, Jonas, Pennacchio, Len A, Roberts, Richard J
Published in PLoS genetics (12.02.2016)
Published in PLoS genetics (12.02.2016)
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Journal Article
A Comparison of the Costs and Benefits of Bacterial Gene Expression
Price, Morgan N, Wetmore, Kelly M, Deutschbauer, Adam M, Arkin, Adam P
Published in PloS one (06.10.2016)
Published in PloS one (06.10.2016)
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Journal Article
Indirect and suboptimal control of gene expression is widespread in bacteria
Price, Morgan N, Deutschbauer, Adam M, Skerker, Jeffrey M, Wetmore, Kelly M, Ruths, Troy, Mar, Jordan S, Kuehl, Jennifer V, Shao, Wenjun, Arkin, Adam P
Published in Molecular systems biology (2013)
Published in Molecular systems biology (2013)
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Journal Article
Genetic dissection of chlorate respiration in Pseudomonas stutzeri PDA reveals syntrophic (per)chlorate reduction
Clark, Iain C., Youngblut, Matt, Jacobsen, Gillian, Wetmore, Kelly M., Deutschbauer, Adam, Lucas, Lauren, Coates, John D.
Published in Environmental microbiology (01.10.2016)
Published in Environmental microbiology (01.10.2016)
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Journal Article
Towards an Informative Mutant Phenotype for Every Bacterial Gene
Deutschbauer, Adam, Price, Morgan N, Wetmore, Kelly M, Tarjan, Daniel R, Xu, Zhuchen, Shao, Wenjun, Leon, Dacia, Arkin, Adam P, Skerker, Jeffrey M
Published in Journal of bacteriology (01.10.2014)
Published in Journal of bacteriology (01.10.2014)
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Journal Article
Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough
Trotter, Valentine V, Shatsky, Maxim, Price, Morgan N, Juba, Thomas R, Zane, Grant M, De León, Kara B, Majumder, Erica L-W, Gui, Qin, Ali, Rida, Wetmore, Kelly M, Kuehl, Jennifer V, Arkin, Adam P, Wall, Judy D, Deutschbauer, Adam M, Chandonia, John-Marc, Butland, Gareth P
Published in Frontiers in microbiology (31.03.2023)
Published in Frontiers in microbiology (31.03.2023)
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Journal Article
Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates
Skerker, Jeffrey M, Leon, Dacia, Price, Morgan N, Mar, Jordan S, Tarjan, Daniel R, Wetmore, Kelly M, Deutschbauer, Adam M, Baumohl, Jason K, Bauer, Stefan, Ibáñez, Ana B, Mitchell, Valerie D, Wu, Cindy H, Hu, Ping, Hazen, Terry, Arkin, Adam P
Published in Molecular systems biology (18.06.2013)
Published in Molecular systems biology (18.06.2013)
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Journal Article
Mechanisms of Chromium and Uranium Toxicity in Pseudomonas stutzeri RCH2 Grown under Anaerobic Nitrate-Reducing Conditions
Thorgersen, Michael P, Lancaster, W Andrew, Ge, Xiaoxuan, Zane, Grant M, Wetmore, Kelly M, Vaccaro, Brian J, Poole, 2nd, Farris L, Younkin, Adam D, Deutschbauer, Adam M, Arkin, Adam P, Wall, Judy D, Adams, Michael W W
Published in Frontiers in microbiology (10.08.2017)
Published in Frontiers in microbiology (10.08.2017)
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Journal Article
The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20
Price, Morgan N, Ray, Jayashree, Wetmore, Kelly M, Kuehl, Jennifer V, Bauer, Stefan, Deutschbauer, Adam M, Arkin, Adam P
Published in Frontiers in microbiology (31.10.2014)
Published in Frontiers in microbiology (31.10.2014)
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Journal Article
Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Pseudomonas Co-culture Biofilms
Kosina, Suzanne M, Rademacher, Peter, Wetmore, Kelly M, de Raad, Markus, Zemla, Marcin, Zane, Grant M, Zulovich, Jennifer J, Chakraborty, Romy, Bowen, Benjamin P, Wall, Judy D, Auer, Manfred, Arkin, Adam P, Deutschbauer, Adam M, Northen, Trent R
Published in Frontiers in microbiology (09.12.2021)
Published in Frontiers in microbiology (09.12.2021)
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Journal Article
Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses
Vaccaro, Brian J, Thorgersen, Michael P, Lancaster, W Andrew, Price, Morgan N, Wetmore, Kelly M, Poole, 2nd, Farris L, Deutschbauer, Adam, Arkin, Adam P, Adams, Michael W W
Published in Applied and Environmental Microbiology (01.01.2016)
Published in Applied and Environmental Microbiology (01.01.2016)
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Journal Article
A metabolic pathway for catabolizing levulinic acid in bacteria
Rand, Jacqueline M., Pisithkul, Tippapha, Clark, Ryan L., Thiede, Joshua M., Mehrer, Christopher R., Agnew, Daniel E., Campbell, Candace E., Markley, Andrew L., Price, Morgan N., Ray, Jayashree, Wetmore, Kelly M., Suh, Yumi, Arkin, Adam P., Deutschbauer, Adam M., Amador-Noguez, Daniel, Pfleger, Brian F.
Published in Nature microbiology (01.12.2017)
Published in Nature microbiology (01.12.2017)
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