Identification and manipulation of the molecular determinants influencing poliovirus recombination
Runckel, Charles, Westesson, Oscar, Andino, Raul, DeRisi, Joseph L
Published in PLoS pathogens (01.02.2013)
Published in PLoS pathogens (01.02.2013)
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Journal Article
Global RNA Structure Analysis of Poliovirus Identifies a Conserved RNA Structure Involved in Viral Replication and Infectivity
Burrill, Cecily P, Westesson, Oscar, Schulte, Michael B, Strings, Vanessa R, Segal, Mark, Andino, Raul
Published in Journal of Virology (01.11.2013)
Published in Journal of Virology (01.11.2013)
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Journal Article
HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction
WESTESSON, Oscar, BARQUIST, Lars, HOLMES, Ian
Published in Bioinformatics (Oxford, England) (15.04.2012)
Published in Bioinformatics (Oxford, England) (15.04.2012)
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Journal Article
Visualizing next-generation sequencing data with JBrowse
Westesson, Oscar, Skinner, Mitchell, Holmes, Ian
Published in Briefings in bioinformatics (01.03.2013)
Published in Briefings in bioinformatics (01.03.2013)
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Journal Article
AAV ancestral reconstruction library enables selection of broadly infectious viral variants
Santiago-Ortiz, J, Ojala, D S, Westesson, O, Weinstein, J R, Wong, S Y, Steinsapir, A, Kumar, S, Holmes, I, Schaffer, D V
Published in Gene therapy (01.12.2015)
Published in Gene therapy (01.12.2015)
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Journal Article
Abstract 2316: Integrated genomic and epigenomic cell-free DNA (cfDNA) analysis for the detection of early-stage colorectal cancer
Westesson, Oscar, Axelrod, Haley, Dean, Jason, He, Yupeng, Sample, Paul, Zotenko, Elena, McCole, Ruth, Goel, Mohit, Eid, Charbel, Kurata, Jessica, Kong, Yu, Hartwig, Anna, Snyder, Matthew, Greenleaf, Will, Raymond, Victoria M., Chudova, Darya, Jaimovich, Ariel, Talasaz, AmirAli
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Analytical validation of a tissue agnostic ctDNA MRD assay using tumor specific methylation and somatic variant profiles in early-stage CRC
Artieri, Carlo, Axelrod, Haley, Baca, Arthur, Burke, Jordan, Chudova, Darya, Dahdouli, Mahmoud, Ghadiri, Farsheed, Hartwig, Anna, He, Yupeng, Hite, Dustin, Jaimovich, Ariel, Juntilla, Marisa, Kurata, Jessica, Kong, Yu, Nance, Tracy, Ohshima, Saiyou, Sharma, Sweta, Westesson, Oscar, Talasaz, AmirAli
Published in Journal of clinical oncology (20.05.2020)
Published in Journal of clinical oncology (20.05.2020)
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Journal Article
Abstract 916: Combined genomic and epigenomic assessment of cell-free circulating tumor DNA (ctDNA) improves assay sensitivity in early-stage colorectal cancer (CRC)
Kim, Seung-Tae, Raymond, Victoria M., Park, Joon Oh, Zotenko, Elena, Park, Young Suk, Schultz, Matthew, Kang, Won Ki, Westesson, Oscar, Kim, Hee-Cheol, He, Yupeng, Odegaard, Justin I., Mortimer, Stefanie A., Greenleaf, William J., Jaimovich, Ariel, Lee, Jeeyun, Talasaz, AmirAli
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
260. AAV Ancestral Reconstruction Library Enables Selection of Broadly Infectious Viral Variants
Ojala, David S., Santiago-Ortiz, Jorge, Westesson, Oscar, Weinstein, John R., Wong, Sophie Y., Steinsapir, Andrew, Kumar, Sanjay, Holmes, Ian, Schaffer, David
Published in Molecular therapy (01.05.2015)
Published in Molecular therapy (01.05.2015)
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Journal Article
Abstract 2173: Robust estimation of mutation burden
Westesson, Oscar, Nielsen, Rasmus, St John, John, Caulin, Aleah, Hahner, Nicholas, Stewart, Stewart, Foo, Catherine, Lung, Kimberly, Catalano, Jeff, Lee, Mandy, Giannikopoulos, Petros, Polkinghorn, Will, Wiessman, Jonathan, Regev, Aviv, Bivona, Trever
Published in Cancer research (Chicago, Ill.) (01.08.2015)
Published in Cancer research (Chicago, Ill.) (01.08.2015)
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Journal Article
Abstract 4707: Comprehensive integrated genomic analysis
Foo, Catherine K., John, John St, Hahner, Nicholas, Westesson, Oscar, Skinner, Mitchell E., Parikh, Urvish, Lung, Kimberly, Cauhlin, Aleah F., Catalano, Jeffrey P., Wellde, Anne S., Barry, Jonathan K., Wellde, George W., Ma, Patrick, Rosell, Rafael, Zorilla, Andres Felipe Cardona, Polkinghorn, William R., Bivona, Trever G., Weissman, Jonathan S., Giannikopoulos, Petros
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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Journal Article
Clinical validation of a comprehensive cancer genomics analysis for lung cancer patients
Foo, Catherine K., St. John, John A., Westesson, Oscar, Hahner, Nicholas J., Caulin, Aleah F., Skinner, Mitchell E., Catalano, Jeffrey P., Lung, Kimberly, Parikh, Urvish G., Wellde, Anne S., Barry, Jonathan K., Wellde, George W., Rosell, Rafael, Weissman, Jonathan S., Polkinghorn, William Reilly, Bivona, Trever Grant, Giannikopoulos, Petros
Published in Journal of clinical oncology (20.05.2014)
Published in Journal of clinical oncology (20.05.2014)
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Journal Article
Integrated genomic analysis for revealing broad remodeling of EGFR-targeted therapy resistant lung cancers
Giannikopoulos, Petros, St. John, John A., Parker, Joel S, Westesson, Oscar, Hahner, Nicholas J., Karachaliou, Niki, Costa, Carlota, Caulin, Aleah F., Lozano, Maria D., Perez-Gracia, Jose Luis, Curioni Fontecedro, Alessandra, Jantus-Lewintre, Eloisa, Vergnenegre, Alain, Gervais, Radj, Bordoni, Rodolfo, Stahel, Rolf A., Cardona Zorrilla, Andres Felipe, Weissman, Jonathan S., Polkinghorn, William Reilly, Bivona, Trever Grant
Published in Journal of clinical oncology (20.05.2014)
Published in Journal of clinical oncology (20.05.2014)
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Journal Article
Abstract 954: Integrated genomic analysis by whole exome and transcriptome sequencing of tumor samples from EGFR-mutant non-small-cell lung cancer patients with acquired resistance to erlotinib
Giannikopoulos, Petros, John, John St, Hahner, Nicholas, Parker, Joel S., Karachaliou, Niki, Costa, Carlota, Westesson, Oscar, Parikh, Urvish, Foo, Catherine K., Cauhlin, Aleah F., Lozano, Maria D., Viteri, Santiago, Perez-Gracia, Jose L., Curioni, Alessandra, Jantus-Lewintre, Eloisa, Camps, Carlos, Vergenegre, Alain, Gervais, Radj, Wellde, Anne, Barry, Jonathan, Wellde, George W., Bordoni, Rodolfo, Stahel, Rolf, Zorilla, Andres Felipe Cardona, Polkinghorn, William R., Weissman, Jonathan, Bivona, Trever G., Rosell, Rafael
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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Journal Article
Identification and Manipulation of the Molecular Determinants Influencing Poliovirus Recombination. e1003164
Runckel, Charles, Westesson, Oscar, Andino, Raul, DeRisi, Joseph L
Published in PLoS pathogens (01.02.2013)
Published in PLoS pathogens (01.02.2013)
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