Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles
Nelson, Maria T., Pope, Christopher E., Marsh, Robyn L., Wolter, Daniel J., Weiss, Eli J., Hager, Kyle R., Vo, Anh T., Brittnacher, Mitchell J., Radey, Matthew C., Hayden, Hillary S., Eng, Alexander, Miller, Samuel I., Borenstein, Elhanan, Hoffman, Lucas R.
Published in Cell reports (Cambridge) (19.02.2019)
Published in Cell reports (Cambridge) (19.02.2019)
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Journal Article
CFTR dysregulation drives active selection of the gut microbiome
Meeker, Stacey M, Mears, Kevin S, Sangwan, Naseer, Brittnacher, Mitchell J, Weiss, Eli J, Treuting, Piper M, Tolley, Nicholas, Pope, Christopher E, Hager, Kyle R, Vo, Anh T, Paik, Jisun, Frevert, Charles W, Hayden, Hillary S, Hoffman, Lucas R, Miller, Samuel I, Hajjar, Adeline M
Published in PLoS pathogens (01.01.2020)
Published in PLoS pathogens (01.01.2020)
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Journal Article
Infants with cystic fibrosis have altered fecal functional capacities with potential clinical and metabolic consequences
Eng, Alexander, Hayden, Hillary S, Pope, Christopher E, Brittnacher, Mitchell J, Vo, Anh T, Weiss, Eli J, Hager, Kyle R, Leung, Daniel H, Heltshe, Sonya L, Raftery, Daniel, Miller, Samuel I, Hoffman, Lucas R, Borenstein, Elhanan
Published in BMC microbiology (15.09.2021)
Published in BMC microbiology (15.09.2021)
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Journal Article
GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis
Brittnacher, Mitchell J, Heltshe, Sonya L, Hayden, Hillary S, Radey, Matthew C, Weiss, Eli J, Damman, Christopher J, Zisman, Timothy L, Suskind, David L, Miller, Samuel I
Published in PloS one (08.07.2016)
Published in PloS one (08.07.2016)
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Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress
Hayden, Hillary S, Matamouros, Susana, Hager, Kyle R, Brittnacher, Mitchell J, Rohmer, Laurence, Radey, Matthew C, Weiss, Eli J, Kim, Katie B, Jacobs, Michael A, Sims-Day, Elizabeth H, Yue, Min, Zaidi, Mussaret B, Schifferli, Dieter M, Manning, Shannon D, Walson, Judd L, Miller, Samuel I
Published in mBio (08.03.2016)
Published in mBio (08.03.2016)
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Journal Article
Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii
Gallagher, Larry A, Ramage, Elizabeth, Weiss, Eli J, Radey, Matthew, Hayden, Hillary S, Held, Kiara G, Huse, Holly K, Zurawski, Daniel V, Brittnacher, Mitchell J, Manoil, Colin
Published in Journal of bacteriology (15.06.2015)
Published in Journal of bacteriology (15.06.2015)
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Fecal dysbiosis in infants with cystic fibrosis is associated with early linear growth failure
Hayden, Hillary S., Eng, Alexander, Pope, Christopher E., Brittnacher, Mitchell J., Vo, Anh T., Weiss, Eli J., Hager, Kyle R., Martin, Bryan D., Leung, Daniel H., Heltshe, Sonya L., Borenstein, Elhanan, Miller, Samuel I., Hoffman, Lucas R.
Published in Nature medicine (01.02.2020)
Published in Nature medicine (01.02.2020)
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Journal Article
Maintenance tobramycin primarily affects untargeted bacteria in the CF sputum microbiome
Nelson, Maria T, Wolter, Daniel J, Eng, Alexander, Weiss, Eli J, Vo, Anh T, Brittnacher, Mitchell J, Hayden, Hillary S, Ravishankar, Sumedha, Bautista, Gilbert, Ratjen, Anina, Blackledge, Marcella, McNamara, Sharon, Nay, Laura, Majors, Cheryl, Miller, Samuel I, Borenstein, Elhanan, Simon, Richard H, LiPuma, John J, Hoffman, Luke R
Published in Thorax (01.09.2020)
Published in Thorax (01.09.2020)
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Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis
Matamouros, Susana, Hayden, Hillary S., Hager, Kyle R., Brittnacher, Mitchell J., Lachance, Kristina, Weiss, Eli J., Pope, Christopher E., Imhaus, Anne-Flore, McNally, Colin P., Borenstein, Elhanan, Hoffman, Lucas R., Miller, Samuel I.
Published in Proceedings of the National Academy of Sciences - PNAS (13.02.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (13.02.2018)
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Genomic analysis of the emergence of 20th century epidemic dysentery
Rohmer, Laurence, Jacobs, Michael A, Brittnacher, Mitchell J, Fong, Christine, Hayden, Hillary S, Hocquet, Didier, Weiss, Eli J, Radey, Matthew, Germani, Yves, Talukder, Kaisar Ali, Hager, Anthony J, Kemner, John M, Sims-Day, Elizabeth H, Matamouros, Susana, Hager, Kyle R, Miller, Samuel I
Published in BMC genomics (10.05.2014)
Published in BMC genomics (10.05.2014)
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Blocking Mitochondrial Zn2+ Accumulation after Ischemia Reduces Mitochondrial Dysfunction and Neuronal Injury
Medvedeva, Yuliya V, Yin, Hong Z, Bazrafkan, Afsheen, Yeromin, Andriy, Ji, Sung G, Weiss-Hung, Eli J, Sharman, Edward, Avilez, Alyssa P, Maki, Niki, Rafi, Masih A, Tian, Guilian, Akbari, Yama, Weiss, John H
Published in The Journal of neuroscience (29.06.2022)
Published in The Journal of neuroscience (29.06.2022)
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Journal Article
Blocking Mitochondrial Zn 2+ Accumulation after Ischemia Reduces Mitochondrial Dysfunction and Neuronal Injury
Medvedeva, Yuliya V, Yin, Hong Z, Bazrafkan, Afsheen, Yeromin, Andriy, Ji, Sung G, Weiss-Hung, Eli J, Sharman, Edward, Avilez, Alyssa P, Maki, Niki, Rafi, Masih A, Tian, Guilian, Akbari, Yama, Weiss, John H
Published in The Journal of neuroscience (29.06.2022)
Published in The Journal of neuroscience (29.06.2022)
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