16S rRNA gene-based assessment of common broiler chicken sampling methods: Evaluating intra-flock sample size, cecal pair similarity, and cloacal swab similarity to other alimentary tract locations
Weinroth, Margaret D., Oakley, Brian, Ramírez, Gustavo A., Reyes, Arquimides, Harris, Caitlin E., Buhr, R. Jeff
Published in Frontiers in physiology (19.10.2022)
Published in Frontiers in physiology (19.10.2022)
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Journal Article
Rates of evolutionary change of resident Escherichia coli O157:H7 differ within the same ecological niche
Weinroth, Margaret D, Clawson, Michael L, Arthur, Terrance M, Wells, James E, Brichta-Harhay, Dayna M, Strachan, Norval, Bono, James L
Published in BMC genomics (07.04.2022)
Published in BMC genomics (07.04.2022)
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Journal Article
Increased Prevalence of Salmonella Infantis Isolated from Raw Chicken and Turkey Products in the United States Is Due to a Single Clonal Lineage Carrying the pESI Plasmid
McMillan, Elizabeth A, Weinroth, Margaret D, Frye, Jonathan G
Published in Microorganisms (Basel) (21.07.2022)
Published in Microorganisms (Basel) (21.07.2022)
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Journal Article
Escherichia coli O157:H7 tir 255 T > A allele strains differ in chromosomal and plasmid composition
Weinroth, Margaret D, Clawson, Michael L, Harhay, Gregory P, Eppinger, Mark, Harhay, Dayna M, Smith, Timothy P L, Bono, James L
Published in Frontiers in microbiology (15.12.2023)
Published in Frontiers in microbiology (15.12.2023)
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Journal Article
Ground beef microbiome changes with antimicrobial decontamination interventions and product storage
Weinroth, Margaret D, Britton, Brianna C, McCullough, Kathryn R, Martin, Jennifer N, Geornaras, Ifigenia, Knight, Rob, Belk, Keith E, Metcalf, Jessica L
Published in PloS one (05.06.2019)
Published in PloS one (05.06.2019)
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Journal Article
Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period
Doster, Enrique, Rovira, Pablo, Noyes, Noelle R, Burgess, Brandy A, Yang, Xiang, Weinroth, Margaret D, Lakin, Steven M, Dean, Christopher J, Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I, Boucher, Christina, Ruiz, Jamie, Belk, Keith E, Morley, Paul S
Published in Frontiers in microbiology (30.07.2018)
Published in Frontiers in microbiology (30.07.2018)
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Journal Article
A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification
Doster, Enrique, Rovira, Pablo, Noyes, Noelle R., Burgess, Brandy A., Yang, Xiang, Weinroth, Margaret D., Linke, Lyndsey, Magnuson, Roberta, Boucher, Christina, Belk, Keith E., Morley, Paul S.
Published in Frontiers in microbiology (01.11.2019)
Published in Frontiers in microbiology (01.11.2019)
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Journal Article
Resistomes and microbiome of meat trimmings and colon content from culled cows raised in conventional and organic production systems
Weinroth, Margaret D, Thomas, Kevin M, Doster, Enrique, Vikram, Amit, Schmidt, John W, Arthur, Terrance M, Wheeler, Tommy L, Parker, Jennifer K, Hanes, Ayanna S, Alekoza, Najla, Wolfe, Cory, Metcalf, Jessica L, Morley, Paul S, Belk, Keith E
Published in Animal microbiome (10.03.2022)
Published in Animal microbiome (10.03.2022)
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Journal Article
Considerations and best practices in animal science 16S ribosomal RNA gene sequencing microbiome studies
Weinroth, Margaret D, Belk, Aeriel D, Dean, Chris, Noyes, Noelle, Dittoe, Dana K, Rothrock, Michael J, Ricke, Steven C, Myer, Phillip R, Henniger, Madison T, Ramírez, Gustavo A, Oakley, Brian B, Summers, Katie Lynn, Miles, Asha M, Ault-Seay, Taylor B, Yu, Zhongtang, Metcalf, Jessica L, Wells, James E
Published in Journal of animal science (01.02.2022)
Published in Journal of animal science (01.02.2022)
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Journal Article
Antimicrobial Resistance in U.S. Retail Ground Beef with and without Label Claims Regarding Antibiotic Use
Schmidt, John W, Vikram, Amit, Doster, Enrique, Thomas, Kevin, Weinroth, Margaret D, Parker, Jennifer, Hanes, Ayanna, Geornaras, Ifigenia, Morley, Paul S, Belk, Keith E, Wheeler, Tommy L, Arthur, Terrance M
Published in Journal of food protection (01.05.2021)
Published in Journal of food protection (01.05.2021)
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Journal Article
Antimicrobial Resistance at Two U.S. Cull Cow Processing Establishments
Schmidt, John W, Vikram, Amit, Arthur, Terrance M, Belk, Keith E, Morley, Paul S, Weinroth, Margaret D, Wheeler, Tommy L
Published in Journal of food protection (01.12.2020)
Published in Journal of food protection (01.12.2020)
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Journal Article
Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle
Weinroth, Margaret D, Scott, H Morgan, Norby, Bo, Loneragan, Guy H, Noyes, Noelle R, Rovira, Pablo, Doster, Enrique, Yang, Xiang, Woerner, Dale R, Morley, Paul S, Belk, Keith E
Published in Applied and environmental microbiology (01.07.2018)
Published in Applied and environmental microbiology (01.07.2018)
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Journal Article
Rapid estimation of Salmonella enterica contamination level in ground beef – Application of the time-to-positivity method using a combination of molecular detection and direct plating
Harhay, Dayna M., Weinroth, Margaret D., Bono, James L., Harhay, Gregory P., Bosilevac, Joseph M.
Published in Food microbiology (01.02.2021)
Published in Food microbiology (01.02.2021)
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Journal Article
Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics
Huebner, Katherine L., Martin, Jennifer N., Weissend, Carla J., Holzer, Katlyn L., Parker, Jennifer K., Lakin, Steven M., Doster, Enrique, Weinroth, Margaret D., Abdo, Zaid, Woerner, Dale R., Metcalf, Jessica L., Geornaras, Ifigenia, Bryant, Tony C., Morley, Paul S., Belk, Keith E.
Published in Scientific reports (22.02.2019)
Published in Scientific reports (22.02.2019)
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Journal Article
Increased Prevalence of ISalmonella/I Infantis Isolated from Raw Chicken and Turkey Products in the United States Is Due to a Single Clonal Lineage Carrying the pESI Plasmid
McMillan, Elizabeth A, Weinroth, Margaret D, Frye, Jonathan G
Published in Microorganisms (Basel) (21.07.2022)
Published in Microorganisms (Basel) (21.07.2022)
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Journal Article
Investigation of tylosin in feed of feedlot cattle and effects on liver abscess prevalence, and fecal and soil microbiomes and resistomes1
Weinroth, Margaret D, Martin, Jennifer N, Doster, Enrique, Geornaras, Ifigenia, Parker, Jennifer K, Carlson, Clay R, Metcalf, Jessica L, Morley, Paul S, Belk, Keith E
Published in Journal of animal science (04.11.2019)
Published in Journal of animal science (04.11.2019)
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Journal Article