Time-lapse X-ray phase-contrast microtomography for in vivo imaging and analysis of morphogenesis
Moosmann, Julian, Ershov, Alexey, Weinhardt, Venera, Baumbach, Tilo, Prasad, Maneeshi S, LaBonne, Carole, Xiao, Xianghui, Kashef, Jubin, Hofmann, Ralf
Published in Nature protocols (01.02.2014)
Published in Nature protocols (01.02.2014)
Get full text
Journal Article
Quantitative morphometric analysis of adult teleost fish by X-ray computed tomography
Weinhardt, Venera, Shkarin, Roman, Wernet, Tobias, Wittbrodt, Joachim, Baumbach, Tilo, Loosli, Felix
Published in Scientific reports (08.11.2018)
Published in Scientific reports (08.11.2018)
Get full text
Journal Article
Visualisation of gene expression within the context of tissues using an X-ray computed tomography-based multimodal approach
Kairišs, Kristaps, Sokolova, Natalia, Zilova, Lucie, Schlagheck, Christina, Reinhardt, Robert, Baumbach, Tilo, Faragó, Tomáš, van de Kamp, Thomas, Wittbrodt, Joachim, Weinhardt, Venera
Published in Scientific reports (12.04.2024)
Published in Scientific reports (12.04.2024)
Get full text
Journal Article
Identification, visualization and clonal analysis of intestinal stem cells in fish
Aghaallaei, Narges, Gruhl, Franziska, Schaefer, Colin Q, Wernet, Tobias, Weinhardt, Venera, Centanin, Lázaro, Loosli, Felix, Baumbach, Tilo, Wittbrodt, Joachim
Published in Development (Cambridge) (01.10.2016)
Published in Development (Cambridge) (01.10.2016)
Get full text
Journal Article
Quanfima: An open source Python package for automated fiber analysis of biomaterials
Shkarin, Roman, Shkarin, Andrei, Shkarina, Svetlana, Cecilia, Angelica, Surmenev, Roman A, Surmeneva, Maria A, Weinhardt, Venera, Baumbach, Tilo, Mikut, Ralf
Published in PloS one (11.04.2019)
Published in PloS one (11.04.2019)
Get full text
Journal Article
Progression of herpesvirus infection remodels mitochondrial organization and metabolism
Leclerc, Simon, Gupta, Alka, Ruokolainen, Visa, Chen, Jian-Hua, Kunnas, Kari, Ekman, Axel A, Niskanen, Henri, Belevich, Ilya, Vihinen, Helena, Turkki, Paula, Perez-Berna, Ana J, Kapishnikov, Sergey, Mäntylä, Elina, Harkiolaki, Maria, Dufour, Eric, Hytönen, Vesa, Pereiro, Eva, McEnroe, Tony, Fahy, Kenneth, Kaikkonen, Minna U, Jokitalo, Eija, Larabell, Carolyn A, Weinhardt, Venera, Mattola, Salla, Aho, Vesa, Vihinen-Ranta, Maija
Published in PLoS pathogens (15.04.2024)
Published in PLoS pathogens (15.04.2024)
Get full text
Journal Article
Automated 3D cytoplasm segmentation in soft X-ray tomography
Erozan, Ayse, Lösel, Philipp D., Heuveline, Vincent, Weinhardt, Venera
Published in iScience (21.06.2024)
Published in iScience (21.06.2024)
Get full text
Journal Article
GPU-accelerated ray-casting for 3D fiber orientation analysis
Shkarin, Roman, Shkarina, Svetlana, Weinhardt, Venera, Surmenev, Roman A, Surmeneva, Maria A, Shkarin, Andrei, Baumbach, Tilo, Mikut, Ralf
Published in PloS one (29.07.2020)
Published in PloS one (29.07.2020)
Get full text
Journal Article
Switchable resolution in soft x-ray tomography of single cells
Weinhardt, Venera, Chen, Jian-Hua, Ekman, Axel A, Guo, Jessica, Remesh, Soumya G, Hammel, Michal, McDermott, Gerry, Chao, Weilun, Oh, Sharon, Le Gros, Mark A, Larabell, Carolyn A
Published in PloS one (24.01.2020)
Published in PloS one (24.01.2020)
Get full text
Journal Article
Soft X-ray Tomography Reveals HSV-1-Induced Remodeling of Human B Cells
Chen, Jian-Hua, Vanslembrouck, Bieke, Ekman, Axel, Aho, Vesa, Larabell, Carolyn A, Le Gros, Mark A, Vihinen-Ranta, Maija, Weinhardt, Venera
Published in Viruses (27.11.2022)
Published in Viruses (27.11.2022)
Get full text
Journal Article
Quantitative Microscopy Reveals Stepwise Alteration of Chromatin Structure during Herpesvirus Infection
Aho, Vesa, Mäntylä, Elina, Ekman, Axel, Hakanen, Satu, Mattola, Salla, Chen, Jian-Hua, Weinhardt, Venera, Ruokolainen, Visa, Sodeik, Beate, Larabell, Carolyn, Vihinen-Ranta, Maija
Published in Viruses (11.10.2019)
Published in Viruses (11.10.2019)
Get full text
Journal Article
Extending Imaging Volume in Soft X‐Ray Tomography
Ekman, Axel, Chen, Jian-Hua, Vanslembrouck, Bieke, Loconte, Valentina, Larabell, Carolyn A., Le Gros, Mark A., Weinhardt, Venera
Published in Advanced photonics research (01.04.2023)
Published in Advanced photonics research (01.04.2023)
Get full text
Journal Article
A protocol for full-rotation soft X-ray tomography of single cells
Chen, Jian-Hua, Vanslembrouck, Bieke, Loconte, Valentina, Ekman, Axel, Cortese, Mirko, Bartenschlager, Ralf, McDermott, Gerry, Larabell, Carolyn A., Le Gros, Mark A., Weinhardt, Venera
Published in STAR protocols (18.03.2022)
Published in STAR protocols (18.03.2022)
Get full text
Journal Article
Spontaneous driving forces give rise to protein−RNA condensates with coexisting phases and complex material properties
Boeynaems, Steven, Holehouse, Alex S., Weinhardt, Venera, Kovacs, Denes, Van Lindt, Joris, Larabell, Carolyn, Van Den Bosch, Ludo, Das, Rhiju, Tompa, Peter S., Pappu, Rohit V., Gitler, Aaron D.
Published in Proceedings of the National Academy of Sciences - PNAS (16.04.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (16.04.2019)
Get full text
Journal Article
Dehydration as alternative sample preparation for soft X‐ray tomography
Chatzimpinou, Anthoula, Funaya, Charlotta, Rogers, David, O'Connor, Stephen, Kapishnikov, Sergey, Sheridan, Paul, Fahy, Kenneth, Weinhardt, Venera
Published in Journal of microscopy (Oxford) (01.09.2023)
Published in Journal of microscopy (Oxford) (01.09.2023)
Get full text
Journal Article
3D biodegradable scaffolds of polycaprolactone with silicate-containing hydroxyapatite microparticles for bone tissue engineering: high-resolution tomography and in vitro study
Shkarina, Svetlana, Shkarin, Roman, Weinhardt, Venera, Melnik, Elizaveta, Vacun, Gabriele, Kluger, Petra J., Loza, Kateryna, Epple, Matthias, Ivlev, Sergei I., Baumbach, Tilo, Surmeneva, Maria A., Surmenev, Roman A.
Published in Scientific reports (11.06.2018)
Published in Scientific reports (11.06.2018)
Get full text
Journal Article
Analysis and Segmentation of Cytoplasm with U-Net
Erozan, Ayse S, Lösel, Philipp D, Weinhardt, Venera, Heuveline, Vincent
Published in Microscopy and microanalysis (22.07.2023)
Published in Microscopy and microanalysis (22.07.2023)
Get full text
Journal Article