Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis
Smola, Matthew J, Rice, Greggory M, Busan, Steven, Siegfried, Nathan A, Weeks, Kevin M
Published in Nature protocols (01.11.2015)
Published in Nature protocols (01.11.2015)
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Principles for targeting RNA with drug-like small molecules
Warner, Katherine Deigan, Hajdin, Christine E., Weeks, Kevin M.
Published in Nature reviews. Drug discovery (01.08.2018)
Published in Nature reviews. Drug discovery (01.08.2018)
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Redox-based reagents for chemoselective methionine bioconjugation
Lin, Shixian, Yang, Xiaoyu, Jia, Shang, Weeks, Amy M., Hornsby, Michael, Lee, Peter S., Nichiporuk, Rita V., Iavarone, Anthony T., Wells, James A., Toste, F. Dean, Chang, Christopher J.
Published in Science (American Association for the Advancement of Science) (10.02.2017)
Published in Science (American Association for the Advancement of Science) (10.02.2017)
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mRNA structure determines specificity of a polyQ-driven phase separation
Langdon, Erin M, Qiu, Yupeng, Ghanbari Niaki, Amirhossein, McLaughlin, Grace A, Weidmann, Chase A, Gerbich, Therese M, Smith, Jean A, Crutchley, John M, Termini, Christina M, Weeks, Kevin M, Myong, Sua, Gladfelter, Amy S
Published in Science (American Association for the Advancement of Science) (25.05.2018)
Published in Science (American Association for the Advancement of Science) (25.05.2018)
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Journal Article
RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)
Siegfried, Nathan A, Busan, Steven, Rice, Greggory M, Nelson, Julie A E, Weeks, Kevin M
Published in Nature methods (01.09.2014)
Published in Nature methods (01.09.2014)
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Journal Article
Early childhood curiosity and kindergarten reading and math academic achievement
Shah, Prachi E., Weeks, Heidi M., Richards, Blair, Kaciroti, Niko
Published in Pediatric research (01.09.2018)
Published in Pediatric research (01.09.2018)
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Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid
Iserman, Christiane, Roden, Christine A., Boerneke, Mark A., Sealfon, Rachel S.G., McLaughlin, Grace A., Jungreis, Irwin, Fritch, Ethan J., Hou, Yixuan J., Ekena, Joanne, Weidmann, Chase A., Theesfeld, Chandra L., Kellis, Manolis, Troyanskaya, Olga G., Baric, Ralph S., Sheahan, Timothy P., Weeks, Kevin M., Gladfelter, Amy S.
Published in Molecular Cell (17.12.2020)
Published in Molecular Cell (17.12.2020)
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Web Resource
Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing
Mustoe, Anthony M., Busan, Steven, Rice, Greggory M., Hajdin, Christine E., Peterson, Brant K., Ruda, Vera M., Kubica, Neil, Nutiu, Razvan, Baryza, Jeremy L., Weeks, Kevin M.
Published in Cell (22.03.2018)
Published in Cell (22.03.2018)
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Journal Article
Accurate SHAPE-directed RNA structure determination
Deigan, Katherine E, Li, Tian W, Mathews, David H, Weeks, Kevin M
Published in Proceedings of the National Academy of Sciences - PNAS (06.01.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (06.01.2009)
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Journal Article
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
Hajdin, Christine E., Bellaousov, Stanislav, Huggins, Wayne, Leonard, Christopher W., Mathews, David H., Weeks, Kevin M.
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
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Journal Article
Functional classification of long non-coding RNAs by k-mer content
Kirk, Jessime M., Kim, Susan O., Inoue, Kaoru, Smola, Matthew J., Lee, David M., Schertzer, Megan D., Wooten, Joshua S., Baker, Allison R., Sprague, Daniel, Collins, David W., Horning, Christopher R., Wang, Shuo, Chen, Qidi, Weeks, Kevin M., Mucha, Peter J., Calabrese, J. Mauro
Published in Nature genetics (01.10.2018)
Published in Nature genetics (01.10.2018)
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Chassis-based fiber-coupled optical probe design for reproducible quantitative diffuse optical spectroscopy measurements
Matlis, Giselle C, Zhang, Qihuang, Benson, Emilie J, Weeks, M Katie, Andersen, Kristen, Jahnavi, Jharna, Lafontant, Alec, Breimann, Jake, Hallowell, Thomas, Lin, Yuxi, Licht, Daniel J, Yodh, Arjun G, Kilbaugh, Todd J, Forti, Rodrigo M, White, Brian R, Baker, Wesley B, Xiao, Rui, Ko, Tiffany S
Published in PloS one (25.07.2024)
Published in PloS one (25.07.2024)
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Journal Article
Architecture and secondary structure of an entire HIV-1 RNA genome
Weeks, Kevin M, Swanstrom, Ronald, Bess Jr, Julian W, Watts, Joseph M, Burch, Christina L, Leonard, Christopher W, Dang, Kristen K, Gorelick, Robert J
Published in Nature (London) (06.08.2009)
Published in Nature (London) (06.08.2009)
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Journal Article
Single-molecule correlated chemical probing of RNA
Homan, Philip J., Favorov, Oleg V., Lavender, Christopher A., Kursun, Olcay, Ge, Xiyuan, Busan, Steven, Dokholyan, Nikolay V., Weeks, Kevin M.
Published in Proceedings of the National Academy of Sciences - PNAS (23.09.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (23.09.2014)
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