Temporal Convolutional Neural Network for the Classification of Satellite Image Time Series
Pelletier, Charlotte, Webb, Geoffrey, Petitjean, François
Published in Remote sensing (Basel, Switzerland) (01.03.2019)
Published in Remote sensing (Basel, Switzerland) (01.03.2019)
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iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization
Chen, Zhen, Zhao, Pei, Li, Chen, Li, Fuyi, Xiang, Dongxu, Chen, Yong-Zi, Akutsu, Tatsuya, Daly, Roger J, Webb, Geoffrey I, Zhao, Quanzhi, Kurgan, Lukasz, Song, Jiangning
Published in Nucleic acids research (04.06.2021)
Published in Nucleic acids research (04.06.2021)
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InceptionTime: Finding AlexNet for time series classification
Ismail Fawaz, Hassan, Lucas, Benjamin, Forestier, Germain, Pelletier, Charlotte, Schmidt, Daniel F., Weber, Jonathan, Webb, Geoffrey I., Idoumghar, Lhassane, Muller, Pierre-Alain, Petitjean, François
Published in Data mining and knowledge discovery (01.11.2020)
Published in Data mining and knowledge discovery (01.11.2020)
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iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
Chen, Zhen, Zhao, Pei, Li, Fuyi, Leier, André, Marquez-Lago, Tatiana T, Wang, Yanan, Webb, Geoffrey I, Smith, A Ian, Daly, Roger J, Chou, Kuo-Chen, Song, Jiangning
Published in Bioinformatics (15.07.2018)
Published in Bioinformatics (15.07.2018)
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Proximity Forest: an effective and scalable distance-based classifier for time series
Lucas, Benjamin, Shifaz, Ahmed, Pelletier, Charlotte, O’Neill, Lachlan, Zaidi, Nayyar, Goethals, Bart, Petitjean, François, Webb, Geoffrey I.
Published in Data mining and knowledge discovery (01.05.2019)
Published in Data mining and knowledge discovery (01.05.2019)
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SETAR-Tree: a novel and accurate tree algorithm for global time series forecasting
Godahewa, Rakshitha, Webb, Geoffrey I., Schmidt, Daniel, Bergmeir, Christoph
Published in Machine learning (01.07.2023)
Published in Machine learning (01.07.2023)
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iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data
Chen, Zhen, Zhao, Pei, Li, Fuyi, Marquez-Lago, Tatiana T, Leier, André, Revote, Jerico, Zhu, Yan, Powell, David R, Akutsu, Tatsuya, Webb, Geoffrey I, Chou, Kuo-Chen, Smith, A Ian, Daly, Roger J, Li, Jian, Song, Jiangning
Published in Briefings in bioinformatics (21.05.2020)
Published in Briefings in bioinformatics (21.05.2020)
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DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites
Li, Fuyi, Chen, Jinxiang, Leier, André, Marquez-Lago, Tatiana, Liu, Quanzhong, Wang, Yanze, Revote, Jerico, Smith, A Ian, Akutsu, Tatsuya, Webb, Geoffrey I, Kurgan, Lukasz, Song, Jiangning
Published in Bioinformatics (15.02.2020)
Published in Bioinformatics (15.02.2020)
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iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites
Song, Jiangning, Wang, Yanan, Li, Fuyi, Akutsu, Tatsuya, Rawlings, Neil D, Webb, Geoffrey I, Chou, Kuo-Chen
Published in Briefings in Bioinformatics (25.03.2019)
Published in Briefings in Bioinformatics (25.03.2019)
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Book Review
PROSPER: an integrated feature-based tool for predicting protease substrate cleavage sites
Song, Jiangning, Tan, Hao, Perry, Andrew J, Akutsu, Tatsuya, Webb, Geoffrey I, Whisstock, James C, Pike, Robert N
Published in PloS one (29.11.2012)
Published in PloS one (29.11.2012)
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PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features in a machine-learning framework
Song, Jiangning, Li, Fuyi, Takemoto, Kazuhiro, Haffari, Gholamreza, Akutsu, Tatsuya, Chou, Kuo-Chen, Webb, Geoffrey I.
Published in Journal of theoretical biology (14.04.2018)
Published in Journal of theoretical biology (14.04.2018)
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Positive-unlabelled learning of glycosylation sites in the human proteome
Li, Fuyi, Zhang, Yang, Purcell, Anthony W, Webb, Geoffrey I, Chou, Kuo-Chen, Lithgow, Trevor, Li, Chen, Song, Jiangning
Published in BMC bioinformatics (06.03.2019)
Published in BMC bioinformatics (06.03.2019)
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Large-scale comparative assessment of computational predictors for lysine post-translational modification sites
Chen, Zhen, Liu, Xuhan, Li, Fuyi, Li, Chen, Marquez-Lago, Tatiana, Leier, André, Akutsu, Tatsuya, Webb, Geoffrey I, Xu, Dakang, Smith, Alexander Ian, Li, Lei, Chou, Kuo-Chen, Song, Jiangning
Published in Briefings in bioinformatics (27.11.2019)
Published in Briefings in bioinformatics (27.11.2019)
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GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features
Li, Fuyi, Li, Chen, Revote, Jerico, Zhang, Yang, Webb, Geoffrey I., Li, Jian, Song, Jiangning, Lithgow, Trevor
Published in Scientific reports (06.10.2016)
Published in Scientific reports (06.10.2016)
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Positive-unlabeled learning in bioinformatics and computational biology: a brief review
Li, Fuyi, Dong, Shuangyu, Leier, André, Han, Meiya, Guo, Xudong, Xu, Jing, Wang, Xiaoyu, Pan, Shirui, Jia, Cangzhi, Zhang, Yang, Webb, Geoffrey I, Coin, Lachlan J M, Li, Chen, Song, Jiangning
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
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PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection
Song, Jiangning, Wang, Huilin, Wang, Jiawei, Leier, André, Marquez-Lago, Tatiana, Yang, Bingjiao, Zhang, Ziding, Akutsu, Tatsuya, Webb, Geoffrey I., Daly, Roger J.
Published in Scientific reports (31.07.2017)
Published in Scientific reports (31.07.2017)
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Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information
Li, Fuyi, Leier, Andre, Liu, Quanzhong, Wang, Yanan, Xiang, Dongxu, Akutsu, Tatsuya, Webb, Geoffrey I., Smith, A. Ian, Marquez-Lago, Tatiana, Li, Jian, Song, Jiangning
Published in Genomics, proteomics & bioinformatics (01.02.2020)
Published in Genomics, proteomics & bioinformatics (01.02.2020)
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Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features
Li, Yuan, Wang, Mingjun, Wang, Huilin, Tan, Hao, Zhang, Ziding, Webb, Geoffrey I., Song, Jiangning
Published in Scientific reports (21.07.2014)
Published in Scientific reports (21.07.2014)
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