A method to recapitulate early embryonic spatial patterning in human embryonic stem cells
Warmflash, Aryeh, Sorre, Benoit, Etoc, Fred, Siggia, Eric D, Brivanlou, Ali H
Published in Nature methods (01.08.2014)
Published in Nature methods (01.08.2014)
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Nodal is a short-range morphogen with activity that spreads through a relay mechanism in human gastruloids
Liu, Lizhong, Nemashkalo, Anastasiia, Rezende, Luisa, Jung, Ji Yoon, Chhabra, Sapna, Guerra, M. Cecilia, Heemskerk, Idse, Warmflash, Aryeh
Published in Nature communications (25.01.2022)
Published in Nature communications (25.01.2022)
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Rapid changes in morphogen concentration control self-organized patterning in human embryonic stem cells
Heemskerk, Idse, Burt, Kari, Miller, Matthew, Chhabra, Sapna, Guerra, M Cecilia, Liu, Lizhong, Warmflash, Aryeh
Published in eLife (04.03.2019)
Published in eLife (04.03.2019)
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Human neural tube morphogenesis in vitro by geometric constraints
Karzbrun, Eyal, Khankhel, Aimal H., Megale, Heitor C., Glasauer, Stella M. K., Wyle, Yofiel, Britton, George, Warmflash, Aryeh, Kosik, Kenneth S., Siggia, Eric D., Shraiman, Boris I., Streichan, Sebastian J.
Published in Nature (London) (11.11.2021)
Published in Nature (London) (11.11.2021)
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Self-organization of human embryonic stem cells on micropatterns
Deglincerti, Alessia, Etoc, Fred, Guerra, M Cecilia, Martyn, Iain, Metzger, Jakob, Ruzo, Albert, Simunovic, Mijo, Yoney, Anna, Brivanlou, Ali H, Siggia, Eric, Warmflash, Aryeh
Published in Nature protocols (01.11.2016)
Published in Nature protocols (01.11.2016)
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Journal Article
Quantifying cell transitions in C. elegans with data-fitted landscape models
Camacho-Aguilar, Elena, Warmflash, Aryeh, Rand, David A
Published in PLoS computational biology (01.06.2021)
Published in PLoS computational biology (01.06.2021)
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Reaction-diffusion models for morphological patterning of hESCs
Bedekar, Prajakta, Timofeyev, Ilya, Warmflash, Aryeh, Perepelitsa, Misha
Published in Journal of mathematical biology (01.11.2021)
Published in Journal of mathematical biology (01.11.2021)
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Journal Article
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR
Sempou, Emily, Kostiuk, Valentyna, Zhu, Jie, Cecilia Guerra, M., Tyan, Leonid, Hwang, Woong, Camacho-Aguilar, Elena, Caplan, Michael J., Zenisek, David, Warmflash, Aryeh, Owens, Nick D. L., Khokha, Mustafa K.
Published in Nature communications (05.11.2022)
Published in Nature communications (05.11.2022)
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Journal Article
Multilineage Transcriptional Priming and Determination of Alternate Hematopoietic Cell Fates
Laslo, Peter, Spooner, Chauncey J., Warmflash, Aryeh, Lancki, David W., Lee, Hyun-Jun, Sciammas, Roger, Gantner, Benjamin N., Dinner, Aaron R., Singh, Harinder
Published in Cell (25.08.2006)
Published in Cell (25.08.2006)
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Umbrella sampling for nonequilibrium processes
Warmflash, Aryeh, Bhimalapuram, Prabhakar, Dinner, Aaron R
Published in The Journal of chemical physics (21.10.2007)
Published in The Journal of chemical physics (21.10.2007)
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Mesenchymal-epithelial transition regulates initiation of pluripotency exit before gastrulation
Hamidi, Sofiane, Nakaya, Yukiko, Nagai, Hiroki, Alev, Cantas, Kasukawa, Takeya, Chhabra, Sapna, Lee, Ruda, Niwa, Hitoshi, Warmflash, Aryeh, Shibata, Tatsuo, Sheng, Guojun
Published in Development (Cambridge) (01.02.2020)
Published in Development (Cambridge) (01.02.2020)
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Journal Article
Dynamics of TGF-β signaling reveal adaptive and pulsatile behaviors reflected in the nuclear localization of transcription factor Smad4
Warmflash, Aryeh, Zhang, Qixiang, Sorre, Benoit, Vonica, Alin, Siggia, Eric D, Brivanlou, Ali H
Published in Proceedings of the National Academy of Sciences - PNAS (10.07.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (10.07.2012)
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Author Correction: Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR
Sempou, Emily, Kostiuk, Valentyna, Zhu, Jie, Cecilia Guerra, M., Tyan, Leonid, Hwang, Woong, Camacho-Aguilar, Elena, Caplan, Michael J., Zenisek, David, Warmflash, Aryeh, Owens, Nick D. L., Khokha, Mustafa K.
Published in Nature communications (05.06.2023)
Published in Nature communications (05.06.2023)
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