Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data
Sha, Yutong, Wang, Shuxiong, Zhou, Peijie, Nie, Qing
Published in Nucleic acids research (25.09.2020)
Published in Nucleic acids research (25.09.2020)
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Journal Article
Cell lineage and communication network inference via optimization for single-cell transcriptomics
Wang, Shuxiong, Karikomi, Matthew, MacLean, Adam L, Nie, Qing
Published in Nucleic acids research (20.06.2019)
Published in Nucleic acids research (20.06.2019)
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Journal Article
Single cell transcriptomics of human epidermis identifies basal stem cell transition states
Wang, Shuxiong, Drummond, Michael L, Guerrero-Juarez, Christian F, Tarapore, Eric, MacLean, Adam L, Stabell, Adam R, Wu, Stephanie C, Gutierrez, Guadalupe, That, Bao T, Benavente, Claudia A, Nie, Qing, Atwood, Scott X
Published in Nature communications (25.08.2020)
Published in Nature communications (25.08.2020)
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Journal Article
Single-cell transcriptomics of human-skin-equivalent organoids
Stabell, Adam R., Lee, Grace E., Jia, Yunlong, Wong, Kirsten N., Wang, Shuxiong, Ling, Ji, Nguyen, Sandrine D., Sen, George L., Nie, Qing, Atwood, Scott X.
Published in Cell reports (Cambridge) (30.05.2023)
Published in Cell reports (Cambridge) (30.05.2023)
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Journal Article
Inexact proximal stochastic gradient method for convex composite optimization
Wang, Xiao, Wang, Shuxiong, Zhang, Hongchao
Published in Computational optimization and applications (01.12.2017)
Published in Computational optimization and applications (01.12.2017)
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Journal Article
An in vitro vascularized micro-tumor model of human colorectal cancer recapitulates in vivo responses to standard-of-care therapy
Hachey, Stephanie J, Movsesyan, Silva, Nguyen, Quy H, Burton-Sojo, Giselle, Tankazyan, Ani, Wu, Jie, Hoang, Tuyen, Zhao, Da, Wang, Shuxiong, Hatch, Michaela M, Celaya, Elizabeth, Gomez, Samantha, Chen, George T, Davis, Ryan T, Nee, Kevin, Pervolarakis, Nicholas, Lawson, Devon A, Kessenbrock, Kai, Lee, Abraham P, Lowengrub, John, Waterman, Marian L, Hughes, Christopher C W
Published in Lab on a chip (07.04.2021)
Published in Lab on a chip (07.04.2021)
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Journal Article
An vascularized micro-tumor model of human colorectal cancer recapitulates responses to standard-of-care therapy
Hachey, Stephanie J, Movsesyan, Silva, Nguyen, Quy H, Burton-Sojo, Giselle, Tankazyan, Ani, Wu, Jie, Hoang, Tuyen, Zhao, Da, Wang, Shuxiong, Hatch, Michaela M, Celaya, Elizabeth, Gomez, Samantha, Chen, George T, Davis, Ryan T, Nee, Kevin, Pervolarakis, Nicholas, Lawson, Devon A, Kessenbrock, Kai, Lee, Abraham P, Lowengrub, John, Waterman, Marian L, Hughes, Christopher C. W
Published in Lab on a chip (08.04.2021)
Published in Lab on a chip (08.04.2021)
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Journal Article
A feasible adaptive refinement algorithm for linear semi-infinite optimization
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Journal Article
Single-cell analysis of human basal cell carcinoma reveals novel regulators of tumor growth and the tumor microenvironment
Guerrero-Juarez, Christian F, Lee, Gun Ho, Liu, Yingzi, Wang, Shuxiong, Karikomi, Matthew, Sha, Yutong, Chow, Rachel Y, Nguyen, Tuyen T L, Iglesias, Venus Sosa, Aasi, Sumaira, Drummond, Michael L, Nie, Qing, Sarin, Kavita, Atwood, Scott X
Published in Science advances (10.06.2022)
Published in Science advances (10.06.2022)
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Journal Article
Sequential emergence and contraction of epithelial subtypes in the prenatal human choroid plexus revealed by a stem cell model
Masters, Haley, Wang, Shuxiong, Tu, Christina, Nguyen, Quy, Sha, Yutong, Karikomi, Matthew K, Fung, Pamela Shi Ru, Tran, Benjamin, Martel, Cristina, Kwang, Nellie, Neel, Michael, Jaime, Olga G, Espericueta, Victoria, Johnson, Brett A, Kessenbrock, Kai, Nie, Qing, Monuki, Edwin S
Published in bioRxiv (17.06.2024)
Published in bioRxiv (17.06.2024)
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Journal Article
Single cell transcriptomics of human skin equivalent organoids
Stabell, Adam, Wang, Shuxiong, Lee, Grace, Ji, Ling, Nguyen, Sandrine, Sen, George, Nie, Qing, Atwood, Scott
Published in bioRxiv (28.07.2022)
Published in bioRxiv (28.07.2022)
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Single-cell analysis of basal cell carcinoma reveals heat shock proteins promote tumor growth in response to WNT5A-mediated inflammatory signals
Guerrero-Juarez, Christian, Lee, Gun, Liu, Yingzi, Wang, Shuxiong, Sha, Yutong, Chow, Rachel, Nguyen, Tuyen, Aasi, Sumaira, Karikomi, Matthew, Drummond, Michael, Nie, Qing, Sarin, Kavita, Atwood, Scott X
Published in bioRxiv (08.10.2021)
Published in bioRxiv (08.10.2021)
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