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Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal
de Bruijn, Ino, Kundra, Ritika, Mastrogiacomo, Brooke, Tran, Thinh Ngoc, Sikina, Luke, Mazor, Tali, Li, Xiang, Ochoa, Angelica, Zhao, Gaofei, Lai, Bryan, Abeshouse, Adam, Baiceanu, Diana, Ciftci, Ersin, Dogrusoz, Ugur, Dufilie, Andrew, Erkoc, Ziya, Garcia Lara, Elena, Fu, Zhaoyuan, Gross, Benjamin, Haynes, Charles, Heath, Allison, Higgins, David, Jagannathan, Prasanna, Kalletla, Karthik, Kumari, Priti, Lindsay, James, Lisman, Aaron, Leenknegt, Bas, Lukasse, Pieter, Madela, Divya, Madupuri, Ramyasree, van Nierop, Pim, Plantalech, Oleguer, Quach, Joyce, Resnick, Adam C., Rodenburg, Sander Y.A., Satravada, Baby A., Schaeffer, Fedde, Sheridan, Robert, Singh, Jessica, Sirohi, Rajat, Sumer, Selcuk Onur, van Hagen, Sjoerd, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhu, Kelsey, Rusk, Nicole, Brown, Samantha, Lavery, Jessica A., Panageas, Katherine S., Rudolph, Julia E., LeNoue-Newton, Michele L., Warner, Jeremy L., Guo, Xindi, Hunter-Zinck, Haley, Yu, Thomas V., Pilai, Shirin, Nichols, Chelsea, Gardos, Stuart M., Philip, John, Kehl, Kenneth L., Riely, Gregory J., Schrag, Deborah, Lee, Jocelyn, Fiandalo, Michael V., Sweeney, Shawn M., Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Gao, Jianjiong, Schultz, Nikolaus
Published in Cancer research (Chicago, Ill.) (01.12.2023)
Published in Cancer research (Chicago, Ill.) (01.12.2023)
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OncoTree: A Cancer Classification System for Precision Oncology
Kundra, Ritika, Zhang, Hongxin, Sheridan, Robert, Sirintrapun, Sahussapont Joseph, Wang, Avery, Ochoa, Angelica, Wilson, Manda, Gross, Benjamin, Sun, Yichao, Madupuri, Ramyasree, Satravada, Baby A, Reales, Dalicia, Vakiani, Efsevia, Al-Ahmadie, Hikmat A, Dogan, Ahmet, Arcila, Maria, Zehir, Ahmet, Maron, Steven, Berger, Michael F, Viaplana, Cristina, Janeway, Katherine, Ducar, Matthew, Sholl, Lynette, Dogan, Snjezana, Bedard, Philippe, Surrey, Lea F, Sanchez, Iker Huerga, Syed, Aijaz, Rema, Anoop Balakrishnan, Chakravarty, Debyani, Suehnholz, Sarah, Nissan, Moriah, Iyer, Gopakumar V, Murali, Rajmohan, Bouvier, Nancy, Soslow, Robert A, Hyman, David, Younes, Anas, Intlekofer, Andrew, Harding, James J, Carvajal, Richard D, Sabbatini, Paul J, Abou-Alfa, Ghassan K, Morris, Luc, Janjigian, Yelena Y, Gallagher, Meighan M, Soumerai, Tara A, Mellinghoff, Ingo K, Hakimi, Abraham A, Fury, Matthew, Huse, Jason T, Bagrodia, Aditya, Hameed, Meera, Thomas, Stacy, Gardos, Stuart, Cerami, Ethan, Mazor, Tali, Kumari, Priti, Raman, Pichai, Shivdasani, Priyanka, MacFarland, Suzanne, Newman, Scott, Waanders, Angela, Gao, Jianjiong, Solit, David, Schultz, Nikolaus
Published in JCO clinical cancer informatics (01.12.2021)
Published in JCO clinical cancer informatics (01.12.2021)
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Pitch contour tracking in music using Harmonic Locked Loops
Bittner, Rachel M., Avery Wang, Bello, Juan P.
Published in Proceedings of the ... IEEE International Conference on Acoustics, Speech and Signal Processing (1998) (01.03.2017)
Published in Proceedings of the ... IEEE International Conference on Acoustics, Speech and Signal Processing (1998) (01.03.2017)
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Automated Detection of Mitotic Figures in Glioma Tissues Using Deep Learning
Wang, Avery, Ou, Yangming
Published in Proceedings (International Symposium on Biomedical Imaging) (14.04.2025)
Published in Proceedings (International Symposium on Biomedical Imaging) (14.04.2025)
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MODL-17. OBESOGENIC DIET INCREASES NF1-OPTIC PATHWAY GLIOMA FORMATION THROUGH EFFECTS ON THE TUMOR CELL OF ORIGIN
Chan, Ambrose, Zhang, Kailong, Martin, Gemma, Bano, Sabiha, Avery, Wang, Sarvika, Mahto, Gutmann, David, Brossier, Nicole
Published in Neuro-oncology (Charlottesville, Va.) (10.11.2023)
Published in Neuro-oncology (Charlottesville, Va.) (10.11.2023)
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Maternal obesogenic diet operates at the tumor cell of origin to increase incidence and decrease latency of neurofibromatosis type 1 optic pathway glioma
Chan, Ambrose, Zhang, Kailong, Martin, Gemma, Bano, Sabiha, Chatterjee, Jit, Mahto, Sarvika, Wang, Avery, Gutmann, David H, Brossier, Nicole M
Published in Neuro-oncology (Charlottesville, Va.) (05.12.2024)
Published in Neuro-oncology (Charlottesville, Va.) (05.12.2024)
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Automated real-world data integration improves cancer outcome prediction
Jee, Justin, Fong, Christopher, Pichotta, Karl, Tran, Thinh Ngoc, Luthra, Anisha, Waters, Michele, Fu, Chenlian, Altoe, Mirella, Liu, Si-Yang, Maron, Steven B., Ahmed, Mehnaj, Kim, Susie, Pirun, Mono, Chatila, Walid K., de Bruijn, Ino, Pasha, Arfath, Kundra, Ritika, Gross, Benjamin, Mastrogiacomo, Brooke, Aprati, Tyler J., Liu, David, Gao, JianJiong, Capelletti, Marzia, Pekala, Kelly, Loudon, Lisa, Perry, Maria, Bandlamudi, Chaitanya, Donoghue, Mark, Satravada, Baby Anusha, Martin, Axel, Shen, Ronglai, Chen, Yuan, Brannon, A. Rose, Chang, Jason, Braunstein, Lior, Li, Anyi, Safonov, Anton, Stonestrom, Aaron, Sanchez-Vela, Pablo, Wilhelm, Clare, Robson, Mark, Scher, Howard, Ladanyi, Marc, Reis-Filho, Jorge S., Solit, David B., Jones, David R., Gomez, Daniel, Yu, Helena, Chakravarty, Debyani, Yaeger, Rona, Abida, Wassim, Park, Wungki, O’Reilly, Eileen M., Garcia-Aguilar, Julio, Socci, Nicholas, Sanchez-Vega, Francisco, Carrot-Zhang, Jian, Stetson, Peter D., Levine, Ross, Rudin, Charles M., Berger, Michael F., Shah, Sohrab P., Schrag, Deborah, Razavi, Pedram, Kehl, Kenneth L., Li, Bob T., Riely, Gregory J., Schultz, Nikolaus
Published in Nature (London) (19.12.2024)
Published in Nature (London) (19.12.2024)
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Accelerated ultrashort echo time quantitative magnetization transfer (UTE-qMT) imaging of macromolecular fraction (MMF) in cortical bone based on a self-attention convolutional neural network
Du, Kevin, Tang, Harry, Athertya, Jiyo, Wang, Yidan, Hu, Megan, Wang, Avery, Jerban, Saeed, Shin, Soo Hyun, Ma, Yajun, Chung, Christine B., Chang, Eric Y.
Published in Magnetic resonance imaging (01.09.2025)
Published in Magnetic resonance imaging (01.09.2025)
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Abstract 1117: cBioPortal for cancer genomics
de Bruijn, Ino, Mazor, Tali, AlHamad, Rima, Chennault, Calla, Dubin, Corey, Easton-Marks, Jeremy, Fu, Zhaoyuan, Gross, Benjamin, Haynes, Charles, Higgins, David M., Hwee, Jason, Jagannathan, Prasanna K., Kalafati, Mirella, Kalletla, Karthik, Karagöz, Zeynep, Ko, James, Kuijpers, Tim, Kumar, Sowmiyaa, Kumari, Priti, Kundra, Ritika, Lai, Bryan, Li, Xiang, Lindsay, James, Lisman, Aaron, Lu, Qi-Xuan, Madupuri, Ramyasree, Nasir, Zain-ul-Abideen, Ochoa, Angelica, Özgül, Yusuf Ziya, Plantalech, Oleguer, Pon, Matthijs N., Satravada, Baby A., Singh, Jessica, Sumer, Selcuk Onur, van Nierop, Pim, Vleugels, Floris, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, Dogrusoz, Ugur, Heath, Allison, Resnick, Adam, Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Gao, JianJiong, Schultz, Nikolaus
Published in Cancer research (Chicago, Ill.) (21.04.2025)
Published in Cancer research (Chicago, Ill.) (21.04.2025)
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Abstract 207: The cBioPortal for Cancer Genomics
Gao, Jianjiong, Mazor, Tali, de Bruijn, Ino, Abeshouse, Adam, Baiceanu, Diana, Erkoc, Ziya, Gross, Benjamin, Higgins, David, Jagannathan, Prasanna K., Kalletla, Karthik, Kumari, Priti, Kundra, Ritika, Li, Xiang, Lindsay, James, Lisman, Aaron, Lukasse, Pieter, Madala, Divya, Madupuri, Ramyasree, Ochoa, Angelica, Plantalech, Oleguer, Quach, Joyce, Rodenburg, Sander, Satravada, Anusha, Schaeffer, Fedde, Sheridan, Robert, Sikina, Lucas, Sumer, S. Onur, Sun, Yichao, van Dijk, Paul, van Nierop, Pim, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, van Hagen, Sjoerd, van Bochove, Kees, Dogrusoz, Ugur, Heath, Allison, Resnick, Adam, Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Schultz, Nikolaus
Published in Cancer research (Chicago, Ill.) (01.07.2021)
Published in Cancer research (Chicago, Ill.) (01.07.2021)
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Abstract 3209: The cBioPortal for Cancer Genomics
Gao, Jianjiong, Mazor, Tali, Abeshouse, Adam, de Bruijn, Ino, Gross, Benjamin, Kalletla, Karthik, Kumari, Priti, Kundra, Ritika, Li, Xiang, Lindsay, James, Lisman, Aaron, Lukasse, Pieter, Madupuri, Ramyasree, Ochoa, Angelica, Plantalech, Oleguer, Rodenburg, Sander, Schaeffer, Fedde, Sheridan, Robert, Sikina, Lucas, Su, Jing, Sumer, S. Onur, Sun, Yichao, van Dijk, Paul, van Hagen, Sjoerd, van Nierop, Pim, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, Zhu, Kelsey, van Bochove, Kees, Dogrusoz, Ugur, Heath, Allison, Resnick, Adam, Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Schultz, Nikolaus
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Abstract 910: The cBioPortal for cancer genomics
Gao, Jianjiong, Mazor, Tali, Abeshouse, Adam, Ciftci, Ersin, Bruijn, Ino de, Gross, Benjamin, Kalletla, Karthik, Kumari, Priti, Kundra, Ritika, Lindsay, James, Lisman, Aaron, Lukasse, Pieter, Madupuri, Ramyasree, Ochoa, Angelica, Plantalech, Oleguer, Raman, Pichai, Schaeffer, Fedde, Sheridan, Robert, Su, Jing, Sumer, S. Onur, Sun, Yichao, Tan, Sander, Hagen, Sjoerd van, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, Zhu, Kelsey, Bochove, Kees van, Dogrusoz, Ugur, Pugh, Trevor J., Resnick, Adam, Sander, Chris, Cerami, Ethan, Schultz, Nikolaus
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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