A deep-learning framework for multi-level peptide-protein interaction prediction
Lei, Yipin, Li, Shuya, Liu, Ziyi, Wan, Fangping, Tian, Tingzhong, Li, Shao, Zhao, Dan, Zeng, Jianyang
Published in Nature communications (15.09.2021)
Published in Nature communications (15.09.2021)
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Journal Article
MONN: A Multi-objective Neural Network for Predicting Compound-Protein Interactions and Affinities
Li, Shuya, Wan, Fangping, Shu, Hantao, Jiang, Tao, Zhao, Dan, Zeng, Jianyang
Published in Cell systems (22.04.2020)
Published in Cell systems (22.04.2020)
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Journal Article
A novel machine learning framework for automated biomedical relation extraction from large-scale literature repositories
Hong, Lixiang, Lin, Jinjian, Li, Shuya, Wan, Fangping, Yang, Hui, Jiang, Tao, Zhao, Dan, Zeng, Jianyang
Published in Nature machine intelligence (01.06.2020)
Published in Nature machine intelligence (01.06.2020)
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Journal Article
An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19
Ge, Yiyue, Tian, Tingzhong, Huang, Suling, Wan, Fangping, Li, Jingxin, Li, Shuya, Wang, Xiaoting, Yang, Hui, Hong, Lixiang, Wu, Nian, Yuan, Enming, Luo, Yunan, Cheng, Lili, Hu, Chengliang, Lei, Yipin, Shu, Hantao, Feng, Xiaolong, Jiang, Ziyuan, Wu, Yunfu, Chi, Ying, Guo, Xiling, Cui, Lunbiao, Xiao, Liang, Li, Zeng, Yang, Chunhao, Miao, Zehong, Chen, Ligong, Li, Haitao, Zeng, Hainian, Zhao, Dan, Zhu, Fengcai, Shen, Xiaokun, Zeng, Jianyang
Published in Signal transduction and targeted therapy (24.04.2021)
Published in Signal transduction and targeted therapy (24.04.2021)
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Journal Article
DeepCPI: A Deep Learning-based Framework for Large-scale in silico Drug Screening
Wan, Fangping, Zhu, Yue, Hu, Hailin, Dai, Antao, Cai, Xiaoqing, Chen, Ligong, Gong, Haipeng, Xia, Tian, Yang, Dehua, Wang, Ming-Wei, Zeng, Jianyang
Published in Genomics, proteomics & bioinformatics (01.10.2019)
Published in Genomics, proteomics & bioinformatics (01.10.2019)
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Journal Article
Improving molecular property prediction through a task similarity enhanced transfer learning strategy
Li, Han, Zhao, Xinyi, Li, Shuya, Wan, Fangping, Zhao, Dan, Zeng, Jianyang
Published in iScience (21.10.2022)
Published in iScience (21.10.2022)
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Journal Article
EXP2SL: A Machine Learning Framework for Cell-Line-Specific Synthetic Lethality Prediction
Wan, Fangping, Li, Shuya, Tian, Tingzhong, Lei, Yipin, Zhao, Dan, Zeng, Jianyang
Published in Frontiers in pharmacology (28.02.2020)
Published in Frontiers in pharmacology (28.02.2020)
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Journal Article
Analyzing Large-Scale Single-Cell RNA-Seq Data Using Coreset
Usman, Khalid, Wan, Fangping, Zhao, Dan, Peng, Jian, Zeng, Jianyang
Published in IEEE/ACM transactions on computational biology and bioinformatics (24.06.2024)
Published in IEEE/ACM transactions on computational biology and bioinformatics (24.06.2024)
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Journal Article
Secure multiparty computation for privacy-preserving drug discovery
Ma, Rong, Li, Yi, Li, Chenxing, Wan, Fangping, Hu, Hailin, Xu, Wei, Zeng, Jianyang
Published in Bioinformatics (01.05.2020)
Published in Bioinformatics (01.05.2020)
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Journal Article
ACME: pan-specific peptide–MHC class I binding prediction through attention-based deep neural networks
Hu, Yan, Wang, Ziqiang, Hu, Hailin, Wan, Fangping, Chen, Lin, Xiong, Yuanpeng, Wang, Xiaoxia, Zhao, Dan, Huang, Weiren, Zeng, Jianyang
Published in Bioinformatics (01.12.2019)
Published in Bioinformatics (01.12.2019)
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Journal Article
A machine learning-based framework for modeling transcription elongation
Feng, Peiyuan, Xiao, An, Fang, Meng, Wan, Fangping, Li, Shuya, Lang, Peng, Zhao, Dan, Zeng, Jianyang
Published in Proceedings of the National Academy of Sciences - PNAS (09.02.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (09.02.2021)
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Journal Article
Deep generative models for peptide design
Wan, Fangping, Kontogiorgos-Heintz, Daphne, de la Fuente-Nunez, Cesar
Published in Digital discovery (13.06.2022)
Published in Digital discovery (13.06.2022)
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Journal Article
Deep learning tools to accelerate antibiotic discovery
Cesaro, Angela, Bagheri, Mojtaba, Torres, Marcelo, Wan, Fangping, de la Fuente-Nunez, Cesar
Published in Expert opinion on drug discovery (01.07.2023)
Published in Expert opinion on drug discovery (01.07.2023)
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Journal Article
Crowdsourced mapping of unexplored target space of kinase inhibitors
Cichońska, Anna, Ravikumar, Balaguru, Allaway, Robert J, Wan, Fangping, Park, Sungjoon, Isayev, Olexandr, Li, Shuya, Mason, Michael, Lamb, Andrew, Tanoli, Ziaurrehman, Jeon, Minji, Kim, Sunkyu, Popova, Mariya, Capuzzi, Stephen, Zeng, Jianyang, Dang, Kristen, Koytiger, Gregory, Kang, Jaewoo, Wells, Carrow I, Willson, Timothy M, Oprea, Tudor I, Schlessinger, Avner, Drewry, David H, Stolovitzky, Gustavo, Wennerberg, Krister, Guinney, Justin, Aittokallio, Tero
Published in Nature communications (03.06.2021)
Published in Nature communications (03.06.2021)
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Journal Article
A community challenge for a pancancer drug mechanism of action inference from perturbational profile data
Douglass, Eugene F., Allaway, Robert J., Szalai, Bence, Wang, Wenyu, Tian, Tingzhong, Fernández-Torras, Adrià, Realubit, Ron, Karan, Charles, Zheng, Shuyu, Pessia, Alberto, Tanoli, Ziaurrehman, Jafari, Mohieddin, Wan, Fangping, Li, Shuya, Xiong, Yuanpeng, Duran-Frigola, Miquel, Bertoni, Martino, Badia-i-Mompel, Pau, Mateo, Lídia, Guitart-Pla, Oriol, Chung, Verena, Tang, Jing, Zeng, Jianyang, Aloy, Patrick, Saez-Rodriguez, Julio, Guinney, Justin, Gerhard, Daniela S., Califano, Andrea
Published in Cell reports. Medicine (18.01.2022)
Published in Cell reports. Medicine (18.01.2022)
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Journal Article
MONN: A Multi-objective Neural Network for Predicting Pairwise Non-covalent Interactions and Binding Affinities Between Compounds and Proteins
Li, Shuya, Wan, Fangping, Shu, Hantao, Jiang, Tao, Zhao, Dan, Zeng, Jianyang
Published in Research in Computational Molecular Biology
Published in Research in Computational Molecular Biology
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