The evolution of betalain biosynthesis in Caryophyllales
Timoneda, Alfonso, Feng, Tao, Sheehan, Hester, Walker-Hale, Nathanael, Pucker, Boas, Lopez-Nieves, Samuel, Guo, Rui, Brockington, Samuel
Published in The New phytologist (01.10.2019)
Published in The New phytologist (01.10.2019)
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Journal Article
Multiple mechanisms explain loss of anthocyanins from betalain‐pigmented Caryophyllales, including repeated wholesale loss of a key anthocyanidin synthesis enzyme
Pucker, Boas, Walker‐Hale, Nathanael, Dzurlic, Jasmina, Yim, Won C., Cushman, John C., Crum, Alexandra, Yang, Ya, Brockington, Samuel F.
Published in The New phytologist (01.01.2024)
Published in The New phytologist (01.01.2024)
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Journal Article
Evolution of L-DOPA 4,5-dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales
Sheehan, Hester, Feng, Tao, Walker-Hale, Nathanael, Lopez-Nieves, Samuel, Pucker, Boas, Guo, Rui, Yim, Won C., Badgami, Roshani, Timoneda, Alfonso, Zhao, Lijun, Tiley, Helene, Copetti, Dario, Sanderson, Michael J., Cushman, John C., Moore, Michael J., Smith, Stephen A., Brockington, Samuel F.
Published in The New phytologist (01.08.2020)
Published in The New phytologist (01.08.2020)
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Journal Article
Compositional shifts associated with major evolutionary transitions in plants
Smith, Stephen A., Walker‐Hale, Nathanael, Parins‐Fukuchi, Charles Tomomi
Published in The New phytologist (01.09.2023)
Published in The New phytologist (01.09.2023)
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Journal Article
Are seven amino acid substitutions sufficient to explain the evolution of high l‐DOPA 4,5‐dioxygenase activity leading to betalain pigmentation? Revisiting the gain‐of‐function mutants of Bean et al. (2018)
Guerrero‐Rubio, M. Alejandra, Walker‐Hale, Nathanael, Guo, Rui, Sheehan, Hester, Timoneda, Alfonso, Gandia‐Herrero, Fernando, Brockington, Samuel F.
Published in The New phytologist (01.09.2023)
Published in The New phytologist (01.09.2023)
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Journal Article
From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales
Walker, Joseph F., Yang, Ya, Feng, Tao, Timoneda, Alfonso, Mikenas, Jessica, Hutchison, Vera, Edwards, Caroline, Wang, Ning, Ahluwalia, Sonia, Olivieri, Julia, Walker-Hale, Nathanael, Majure, Lucas C., Puente, Raúl, Kadereit, Gudrun, Lauterbach, Maximilian, Eggli, Urs, Flores-Olvera, Hilda, Ochoterena, Helga, Brockington, Samuel F., Moore, Michael J., Smith, Stephen A.
Published in American journal of botany (01.03.2018)
Published in American journal of botany (01.03.2018)
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Journal Article
Characterizing gene tree conflict in plastome-inferred phylogenies
Walker, Joseph F, Walker-Hale, Nathanael, Vargas, Oscar M, Larson, Drew A, Stull, Gregory W
Published in PeerJ (San Francisco, CA) (24.09.2019)
Published in PeerJ (San Francisco, CA) (24.09.2019)
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Journal Article
Focus on an island rulemay hide morphological disparity in insular plants
Brian, Joshua I., Walker-Hale, Nathanael
Published in Proceedings of the National Academy of Sciences - PNAS (10.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (10.12.2019)
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Journal Article
Focus on an island rule may hide morphological disparity in insular plants
Brian, Joshua I, Walker-Hale, Nathanael
Published in Proceedings of the National Academy of Sciences - PNAS (10.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (10.12.2019)
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Journal Article
Phylogenetic Conflicts, Combinability, and Deep Phylogenomics in Plants
Smith, Stephen A., Walker-Hale, Nathanael, Walker, Joseph F., Brown, Joseph W.
Published in Systematic biology (01.05.2020)
Published in Systematic biology (01.05.2020)
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Journal Article
Intragenic Conflict in Phylogenomic Data Sets
Smith, Stephen A, Walker-Hale, Nathanael, Walker, Joseph F
Published in Molecular biology and evolution (01.11.2020)
Published in Molecular biology and evolution (01.11.2020)
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Journal Article
Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction
Berv, Jacob S, Singhal, Sonal, Field, Daniel J, Walker-Hale, Nathanael, McHugh, Sean W, Shipley, J Ryan, Miller, Eliot T, Kimball, Rebecca T, Braun, Edward L, Dornburg, Alex, Parins-Fukuchi, C Tomomi, Prum, Richard O, Winger, Benjamin M, Friedman, Matt, Smith, Stephen A
Published in Science advances (02.08.2024)
Published in Science advances (02.08.2024)
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Journal Article
Evolutionary blocks to anthocyanin accumulation and the loss of an anthocyanin carrier protein in betalain-pigmented Caryophyllales
Boas Pucker, Walker-Hale, Nathanael, Yim, Won Cheol, Cushman, John C, Crumm, Alexandra, Yang, Ya, Brockington, Samuel
Published in bioRxiv (21.10.2022)
Published in bioRxiv (21.10.2022)
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Paper
Molecular early burst associated with the diversification of birds at the K–Pg boundary
Jacob Samuel Berv, Singhal, Sonal, Field, Daniel J, Walker-Hale, Nathanael, Mchugh, Sean W, Jeremy Ryan Shipley, Eliot Trimarchi Miller, Kimball, Rebecca T, Braun, Edward Louis, Dornburg, Alex, C Tomomi Parins-Fukuchi, Richard Owen Prum, Friedman, Matt, Smith, Stephen A
Published in bioRxiv (22.10.2022)
Published in bioRxiv (22.10.2022)
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Paper
Phylogenetic conflicts, combinability, and deep phylogenomics in plants
Smith, Stephen A, Walker, Joseph F, Brown, Joseph, Walker-Hale, Nathanael
Published in bioRxiv (17.10.2019)
Published in bioRxiv (17.10.2019)
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Paper