Transmission of community- and hospital-acquired SARS-CoV-2 in hospital settings in the UK: A cohort study
Mo, Yin, Eyre, David W, Lumley, Sheila F, Walker, Timothy M, Shaw, Robert H, O'Donnell, Denise, Butcher, Lisa, Jeffery, Katie, Donnelly, Christl A, Cooper, Ben S
Published in PLoS medicine (12.10.2021)
Published in PLoS medicine (12.10.2021)
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Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
Meehan, Conor J, Goig, Galo A, Kohl, Thomas A, Verboven, Lennert, Dippenaar, Anzaan, Ezewudo, Matthew, Farhat, Maha R, Guthrie, Jennifer L, Laukens, Kris, Miotto, Paolo, Ofori-Anyinam, Boatema, Dreyer, Viola, Supply, Philip, Suresh, Anita, Utpatel, Christian, van Soolingen, Dick, Zhou, Yang, Ashton, Philip M, Brites, Daniela, Cabibbe, Andrea M, de Jong, Bouke C, de Vos, Margaretha, Menardo, Fabrizio, Gagneux, Sebastien, Gao, Qian, Heupink, Tim H, Liu, Qingyun, Loiseau, Chloé, Rigouts, Leen, Rodwell, Timothy C, Tagliani, Elisa, Walker, Timothy M, Warren, Robin M, Zhao, Yanlin, Zignol, Matteo, Schito, Marco, Gardy, Jennifer, Cirillo, Daniela M, Niemann, Stefan, Comas, Inaki, Van Rie, Annelies
Published in Nature reviews. Microbiology (01.09.2019)
Published in Nature reviews. Microbiology (01.09.2019)
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Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
Votintseva, Antonina A, Bradley, Phelim, Pankhurst, Louise, Del Ojo Elias, Carlos, Loose, Matthew, Nilgiriwala, Kayzad, Chatterjee, Anirvan, Smith, E Grace, Sanderson, Nicolas, Walker, Timothy M, Morgan, Marcus R, Wyllie, David H, Walker, A Sarah, Peto, Tim E A, Crook, Derrick W, Iqbal, Zamin
Published in Journal of clinical microbiology (01.05.2017)
Published in Journal of clinical microbiology (01.05.2017)
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Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
Bradley, Phelim, Gordon, N Claire, Walker, Timothy M, Dunn, Laura, Heys, Simon, Huang, Bill, Earle, Sarah, Pankhurst, Louise J, Anson, Luke, de Cesare, Mariateresa, Piazza, Paolo, Votintseva, Antonina A, Golubchik, Tanya, Wilson, Daniel J, Wyllie, David H, Diel, Roland, Niemann, Stefan, Feuerriegel, Silke, Kohl, Thomas A, Ismail, Nazir, Omar, Shaheed V, Smith, E Grace, Buck, David, McVean, Gil, Walker, A Sarah, Peto, Tim E A, Crook, Derrick W, Iqbal, Zamin
Published in Nature communications (21.12.2015)
Published in Nature communications (21.12.2015)
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Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
Walker, Timothy M, Dr, Ip, Camilla LC, PhD, Harrell, Ruth H, PhD, Evans, Jason T, PhD, Kapatai, Georgia, PhD, Dedicoat, Martin J, MRCP, Eyre, David W, MRCP, Wilson, Daniel J, DPhil, Hawkey, Peter M, Prof, Crook, Derrick W, Prof, Parkhill, Julian, Prof, Harris, David, DPhil, Walker, A Sarah, PhD, Bowden, Rory, PhD, Monk, Philip, FFPHM, Smith, E Grace, FRCPath, Peto, Tim EA, Prof
Published in The Lancet infectious diseases (01.02.2013)
Published in The Lancet infectious diseases (01.02.2013)
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Validating a 14-Drug Microtiter Plate Containing Bedaquiline and Delamanid for Large-Scale Research Susceptibility Testing of Mycobacterium tuberculosis
Rancoita, Paola M V, Cugnata, Federica, Gibertoni Cruz, Ana Luíza, Borroni, Emanuele, Hoosdally, Sarah J, Walker, Timothy M, Grazian, Clara, Davies, Timothy J, Peto, Timothy E A, Crook, Derrick W, Fowler, Philip W, Cirillo, Daniela M
Published in Antimicrobial agents and chemotherapy (01.09.2018)
Published in Antimicrobial agents and chemotherapy (01.09.2018)
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Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study
Pankhurst, Louise J, Del Ojo Elias, Carlos, Votintseva, Antonina A, Walker, Timothy M, Cole, Kevin, Davies, Jim, Fermont, Jilles M, Gascoyne-Binzi, Deborah M, Kohl, Thomas A, Kong, Clare, Lemaitre, Nadine, Niemann, Stefan, Paul, John, Rogers, Thomas R, Roycroft, Emma, Smith, E Grace, Supply, Philip, Tang, Patrick, Wilcox, Mark H, Wordsworth, Sarah, Wyllie, David, Xu, Li, Crook, Derrick W
Published in The lancet respiratory medicine (01.01.2016)
Published in The lancet respiratory medicine (01.01.2016)
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Pathogen-based precision medicine for drug-resistant tuberculosis
Gröschel, Matthias I, Walker, Timothy M, van der Werf, Tjip S, Lange, Christoph, Niemann, Stefan, Merker, Matthias
Published in PLoS pathogens (01.10.2018)
Published in PLoS pathogens (01.10.2018)
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Genomic insights into anthropozoonotic tuberculosis in captive sun bears (Helarctos malayanus) and an Asiatic black bear (Ursus thibetanus) in Cambodia
Officer, Kirsty, Walker, Timothy M, Cheng, Sokleaph, Heng, Seiha, Hidé, Mallorie, Bañuls, Anne-Laure, Cracknell, Jonathan, Broadis, Nev, Thy, Nhim, Abraham, Sam, Warren, Kris, Jackson, Bethany
Published in Scientific reports (28.03.2024)
Published in Scientific reports (28.03.2024)
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The use of whole-genome sequencing in cluster investigation of a multidrug-resistant tuberculosis outbreak
Lalor, Maeve K, Casali, Nicola, Walker, Timothy M, Anderson, Laura F, Davidson, Jennifer A, Ratna, Natasha, Mullarkey, Cathy, Gent, Mike, Foster, Kirsty, Brown, Tim, Magee, John, Barrett, Anne, Crook, Derrick W, Drobniewski, Francis, Thomas, H Lucy, Abubakar, Ibrahim
Published in The European respiratory journal (01.06.2018)
Published in The European respiratory journal (01.06.2018)
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Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures
Votintseva, Antonina A, Pankhurst, Louise J, Anson, Luke W, Morgan, Marcus R, Gascoyne-Binzi, Deborah, Walker, Timothy M, Quan, T Phuong, Wyllie, David H, Del Ojo Elias, Carlos, Wilcox, Mark, Walker, A Sarah, Peto, Tim E A, Crook, Derrick W
Published in Journal of clinical microbiology (01.04.2015)
Published in Journal of clinical microbiology (01.04.2015)
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Multi-Label Random Forest Model for Tuberculosis Drug Resistance Classification and Mutation Ranking
Kouchaki, Samaneh, Yang, Yang, Lachapelle, Alexander, Walker, Timothy M, Walker, A Sarah, Peto, Timothy E A, Crook, Derrick W, Clifton, David A
Published in Frontiers in microbiology (22.04.2020)
Published in Frontiers in microbiology (22.04.2020)
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Spatial Analysis of Drug-Susceptible and Multidrug-Resistant Cases of Tuberculosis, Ho Chi Minh City, Vietnam, 2020-2023
Spies, Ruan, Hong, Hanh N, Trieu, Phu P, Lan, Luong K, Lan, Kim, Hue, N N, Huong, Nguyen T L, Thao, Tran T L N, Quang, Nguyen L, Anh, Thu D D, Vinh, Truong V, Ha, Dang T M, Dat, Phan T, Hai, Nguyen P, Van, Le H, Thwaites, Guy E, Thuong, Nguyen T T, Watson, James A, Walker, Timothy M
Published in Emerging infectious diseases (01.03.2024)
Published in Emerging infectious diseases (01.03.2024)
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Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study
Walker, Timothy M, Lalor, Maeve K, Broda, Agnieszka, Ortega, Luisa Saldana, Morgan, Marcus, Parker, Lynne, Churchill, Sheila, Bennett, Karen, Golubchik, Tanya, Giess, Adam P, Del Ojo Elias, Carlos, Jeffery, Katie J, Bowler, Ian C J W, Laurenson, Ian F, Barrett, Anne, Drobniewski, Francis, McCarthy, Noel D, Anderson, Laura F, Abubakar, Ibrahim, Thomas, H Lucy, Monk, Philip, Smith, E Grace, Walker, A Sarah, Crook, Derrick W, Peto, Tim E A, Conlon, Christopher P
Published in The lancet respiratory medicine (01.04.2014)
Published in The lancet respiratory medicine (01.04.2014)
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Stringent thresholds in SARS-CoV-2 IgG assays lead to under-detection of mild infections
Eyre, David W, Lumley, Sheila F, O'Donnell, Denise, Stoesser, Nicole E, Matthews, Philippa C, Howarth, Alison, Hatch, Stephanie B, Marsden, Brian D, Cox, Stuart, James, Tim, Cornall, Richard J, Stuart, David I, Screaton, Gavin, Ebner, Daniel, Crook, Derrick W, Conlon, Christopher P, Jeffery, Katie, Walker, Timothy M, Peto, Timothy E A
Published in BMC infectious diseases (18.02.2021)
Published in BMC infectious diseases (18.02.2021)
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Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe
Hunt, Martin, Bradley, Phelim, Lapierre, Simon Grandjean, Heys, Simon, Thomsit, Mark, Hall, Michael B, Malone, Kerri M, Wintringer, Penelope, Walker, Timothy M, Cirillo, Daniela M, Comas, Iñaki, Farhat, Maha R, Fowler, Phillip, Gardy, Jennifer, Ismail, Nazir, Kohl, Thomas A, Mathys, Vanessa, Merker, Matthias, Niemann, Stefan, Omar, Shaheed Vally, Sintchenko, Vitali, Smith, Grace, van Soolingen, Dick, Supply, Philip, Tahseen, Sabira, Wilcox, Mark, Arandjelovic, Irena, Peto, Tim E A, Crook, Derrick W, Iqbal, Zamin
Published in Wellcome open research (2019)
Published in Wellcome open research (2019)
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Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting
Donker, Tjibbe, Smieszek, Timo, Henderson, Katherine L, Walker, Timothy M, Hope, Russell, Johnson, Alan P, Woodford, Neil, Crook, Derrick W, Peto, Tim E A, Walker, A Sarah, Robotham, Julie V
Published in PloS one (25.07.2019)
Published in PloS one (25.07.2019)
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