Search Results - "Wagoner, Jason A." :: K.UTB vyhledávací portál | TBU Library Retrieval Portal

The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA

The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA

by Cubuk, Jasmine, Alston, Jhullian J., Incicco, J. Jeremías, Singh, Sukrit, Stuchell-Brereton, Melissa D., Ward, Michael D., Zimmerman, Maxwell I., Vithani, Neha, Griffith, Daniel, Wagoner, Jason A., Bowman, Gregory R., Hall, Kathleen B., Soranno, Andrea, Holehouse, Alex S.
Published in Nature communications (29.03.2021)

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Journal Article

Molecular Motors: Power Strokes Outperform Brownian Ratchets

Molecular Motors: Power Strokes Outperform Brownian Ratchets

by Wagoner, Jason A, Dill, Ken A
Published in The journal of physical chemistry. B (07.07.2016)

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Journal Article

Opposing Pressures of Speed and Efficiency Guide the Evolution of Molecular Machines

Opposing Pressures of Speed and Efficiency Guide the Evolution of Molecular Machines

by Wagoner, Jason A, Dill, Ken A
Published in Molecular biology and evolution (01.12.2019)

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Journal Article

Assessing Implicit Models for Nonpolar Mean Solvation Forces: The Importance of Dispersion and Volume Terms

Assessing Implicit Models for Nonpolar Mean Solvation Forces: The Importance of Dispersion and Volume Terms

by Wagoner, Jason A., Baker, Nathan A.
Published in Proceedings of the National Academy of Sciences - PNAS (30.05.2006)

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Journal Article

Mechanisms for achieving high speed and efficiency in biomolecular machines

Mechanisms for achieving high speed and efficiency in biomolecular machines

by Wagoner, Jason A., Dill, Ken A.
Published in Proceedings of the National Academy of Sciences - PNAS (26.03.2019)

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Journal Article

Evolution of mechanical cooperativity among myosin II motors

Evolution of mechanical cooperativity among myosin II motors

by Wagoner, Jason A., Dill, Ken A.
Published in Proceedings of the National Academy of Sciences - PNAS (18.05.2021)

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Journal Article

Communication: Adaptive boundaries in multiscale simulations

Communication: Adaptive boundaries in multiscale simulations

by Wagoner, Jason A, Pande, Vijay S
Published in The Journal of chemical physics (14.04.2018)

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Journal Article

Finite domain simulations with adaptive boundaries: accurate potentials and nonequilibrium movesets

Finite domain simulations with adaptive boundaries: accurate potentials and nonequilibrium movesets

by Wagoner, Jason A, Pande, Vijay S
Published in The Journal of chemical physics (21.12.2013)

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Journal Article

Reducing the effect of Metropolization on mixing times in molecular dynamics simulations

Reducing the effect of Metropolization on mixing times in molecular dynamics simulations

by Wagoner, Jason A, Pande, Vijay S
Published in The Journal of chemical physics (07.12.2012)

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Journal Article

A smoothly decoupled particle interface: new methods for coupling explicit and implicit solvent

A smoothly decoupled particle interface: new methods for coupling explicit and implicit solvent

by Wagoner, Jason A, Pande, Vijay S
Published in The Journal of chemical physics (07.06.2011)

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Journal Article

Assessing the performance of implicit solvation models at a nucleic acid surface

Assessing the performance of implicit solvation models at a nucleic acid surface

by Dong, Feng, Wagoner, Jason A, Baker, Nathan A
Published in Physical chemistry chemical physics : PCCP (01.01.2008)

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Journal Article

Optimizing the Poisson Dielectric Boundary with Explicit Solvent Forces and Energies: Lessons Learned with Atom-Centered Dielectric Functions

Optimizing the Poisson Dielectric Boundary with Explicit Solvent Forces and Energies: Lessons Learned with Atom-Centered Dielectric Functions

by Swanson, Jessica M. J, Wagoner, Jason A, Baker, Nathan A, McCammon, J. A
Published in Journal of chemical theory and computation (01.01.2007)

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Journal Article

A Catch Bond Suppresses Fluctuations in the Coordinated Actions of Myosin II Motors

A Catch Bond Suppresses Fluctuations in the Coordinated Actions of Myosin II Motors

by Wagoner, Jason A.
Published in Biophysical journal (07.02.2020)

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Journal Article

Evolutionary Tradeoffs in Efficiency and Turnover Rate for F0F1-ATPase

Evolutionary Tradeoffs in Efficiency and Turnover Rate for F0F1-ATPase

by Wagoner, Jason A., Dill, Ken
Published in Biophysical journal (02.02.2018)

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Journal Article

Molecular Motors have Evolved to Optimize Thermodynamic Performance

Molecular Motors have Evolved to Optimize Thermodynamic Performance

by Wagoner, Jason A., Dill, Ken
Published in Biophysical journal (03.02.2017)

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Journal Article

The Nonequilibrium Statistical Thermodynamics of Biological Cycles

The Nonequilibrium Statistical Thermodynamics of Biological Cycles

by Wagoner, Jason A., Dill, Ken
Published in Biophysical journal (16.02.2016)

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Journal Article

The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA

The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA

by Cubuk, Jasmine, Alston, Jhullian J, Incicco, J Jeremías, Singh, Sukrit, Stuchell-Brereton, Melissa D, Ward, Michael D, Zimmerman, Maxwell I, Vithani, Neha, Griffith, Daniel, Wagoner, Jason A, Bowman, Gregory R, Hall, Kathleen B, Soranno, Andrea, Holehouse, Alex S
Published in bioRxiv (21.12.2020)

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Journal Article Paper

Adaptive Boundaries in Multi-Resolution Simulations

Adaptive Boundaries in Multi-Resolution Simulations

by Wagoner, Jason A., Dill, Ken, Pande, Vijay
Published in Biophysical journal (27.01.2015)

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Journal Article

Assessing the performance of implicit solvation models at a nucleic acid surface: Water at Interfaces

Assessing the performance of implicit solvation models at a nucleic acid surface: Water at Interfaces

by FENG DONG, WAGONER, Jason A, BAKER, Nathan A
Published in Physical chemistry chemical physics : PCCP (2008)

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Journal Article

Adaptive Boundaries in Multiscale Simulations

Adaptive Boundaries in Multiscale Simulations

by Wagoner, Jason A, Pande, Vijay S
Published in arXiv.org (03.04.2018)

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