Prostate cancer reshapes the secreted and extracellular vesicle urinary proteomes
Khoo, Amanda, Govindarajan, Meinusha, Qiu, Zhuyu, Liu, Lydia Y., Ignatchenko, Vladimir, Waas, Matthew, Macklin, Andrew, Keszei, Alexander, Neu, Sarah, Main, Brian P., Yang, Lifang, Lance, Raymond S., Downes, Michelle R., Semmes, O. John, Vesprini, Danny, Liu, Stanley K., Nyalwidhe, Julius O., Boutros, Paul C., Kislinger, Thomas
Published in Nature communications (13.06.2024)
Published in Nature communications (13.06.2024)
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Journal Article
Protocol for generating high-fidelity proteomic profiles using DROPPS
Waas, Matthew, Govindarajan, Meinusha, Khoo, Amanda, Zuo, Charlotte, Aastha, Aastha, He, Jilin, Woolman, Michael, Ha, Annie, Lin, Brian, Kislinger, Thomas
Published in STAR protocols (20.12.2024)
Published in STAR protocols (20.12.2024)
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Journal Article
Differential DNA damage repair and PARP inhibitor vulnerability of the mammary epithelial lineages
Kim, Hyeyeon, Aliar, Kazeera, Tharmapalan, Pirashaanthy, McCloskey, Curtis W., Kuttanamkuzhi, Abhijith, Grünwald, Barbara T., Palomero, Luis, Mahendralingam, Mathepan J., Waas, Matthew, Mer, Arvind S., Elliott, Mitchell J., Zhang, Bowen, Al-Zahrani, Khalid N., Langille, Ellen R., Parsons, Michael, Narala, Swami, Hofer, Stefan, Waterhouse, Paul D., Hakem, Razqallah, Haibe-Kains, Benjamin, Kislinger, Thomas, Schramek, Daniel, Cescon, David W., Pujana, Miquel A., Berman, Hal K., Khokha, Rama
Published in Cell reports (Cambridge) (28.11.2023)
Published in Cell reports (Cambridge) (28.11.2023)
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Journal Article
Differential DNA damage repair and PARP inhibitor vulnerability of the mammary epithelial lineages
Kim, Hyeyeon, Aliar, Kazeera, Tharmapalan, Pirashaanthy, McCloskey, Curtis W., Kuttanamkuzhi, Abhijith, Grünwald, Barbara T., Palomero, Luis, Mahendralingam, Mathepan J., Waas, Matthew, Mer, Arvind S., Elliott, Mitchell J., Zhang, Bowen, Al-Zahrani, Khalid N., Langille, Ellen R., Parsons, Michael, Narala, Swami, Hofer, Stefan, Waterhouse, Paul D., Hakem, Razqallah, Haibe-Kains, Benjamin, Kislinger, Thomas, Schramek, Daniel, Cescon, David W., Pujana, Miquel A., Berman, Hal K., Khokha, Rama
Published in Cell reports (Cambridge) (31.10.2023)
Published in Cell reports (Cambridge) (31.10.2023)
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Journal Article
Transcriptional inhibition of etv2 expression is essential for embryonic cardiac development
Schupp, Marcus-Oliver, Waas, Matthew, Chun, Chang-Zoon, Ramchandran, Ramani
Published in Developmental biology (01.09.2014)
Published in Developmental biology (01.09.2014)
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Journal Article
Organelle resolved proteomics uncovers PLA2R1 as a novel cell surface marker required for chordoma growth
Khan, Shahbaz, Zuccato, Jeffrey A, Ignatchenko, Vladimir, Singh, Olivia, Govindarajan, Meinusha, Waas, Matthew, Mejia-Guerrero, Salvador, Gao, Andrew, Zadeh, Gelareh, Kislinger, Thomas
Published in Acta neuropathologica communications (07.03.2024)
Published in Acta neuropathologica communications (07.03.2024)
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Journal Article
Are These Cardiomyocytes? Protocol Development Reveals Impact of Sample Preparation on the Accuracy of Identifying Cardiomyocytes by Flow Cytometry
Waas, Matthew, Weerasekera, Ranjuna, Kropp, Erin M., Romero-Tejeda, Marisol, Poon, Ellen N., Boheler, Kenneth R., Burridge, Paul W., Gundry, Rebekah L.
Published in Stem cell reports (12.02.2019)
Published in Stem cell reports (12.02.2019)
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Journal Article
Discovery and validation of surface N -glycoproteins in MM cell lines and patient samples uncovers immunotherapy targets
Oldham, Robyn A A, Faber, Mary L, Keppel, Theodore R, Buchberger, Amanda R, Waas, Matthew, Hari, Parameswaran, Gundry, Rebekah L, Medin, Jeffrey A
Published in Journal for immunotherapy of cancer (01.08.2020)
Published in Journal for immunotherapy of cancer (01.08.2020)
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Journal Article
CIRFESS: An Interactive Resource for Querying the Set of Theoretically Detectable Peptides for Cell Surface and Extracellular Enrichment Proteomic Studies
Waas, Matthew, Littrell, Jack, Gundry, Rebekah L
Published in Journal of the American Society for Mass Spectrometry (01.07.2020)
Published in Journal of the American Society for Mass Spectrometry (01.07.2020)
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Journal Article
Reference glycan structure libraries of primary human cardiomyocytes and pluripotent stem cell-derived cardiomyocytes reveal cell-type and culture stage-specific glycan phenotypes
Ashwood, Christopher, Waas, Matthew, Weerasekera, Ranjuna, Gundry, Rebekah L.
Published in Journal of molecular and cellular cardiology (01.02.2020)
Published in Journal of molecular and cellular cardiology (01.02.2020)
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Journal Article
Abstract 246: Applying a Quantitative, Cell Surface Glycoproteomic Approach to Understanding the Role of Human Cardiac Fibroblasts in Advanced Heart Failure
Berg Luecke, Linda, Buchberger, Amanda R, Waas, Matthew, Mahr, Claudius, Gundry, Rebekah L
Published in Circulation research (02.08.2019)
Published in Circulation research (02.08.2019)
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Journal Article
Comprehensive Prostate Fluid-Based Spectral Libraries for Enhanced Protein Detection in Urine
Ha, Annie, Khoo, Amanda, Ignatchenko, Vladimir, Khan, Shahbaz, Waas, Matthew, Vesprini, Danny, Liu, Stanley K., Nyalwidhe, Julius O., Semmes, Oliver John, Boutros, Paul C., Kislinger, Thomas
Published in Journal of proteome research (03.05.2024)
Published in Journal of proteome research (03.05.2024)
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Journal Article
Mass Spectrometry-Based Identification of Extracellular Domains of Cell Surface N-Glycoproteins: Defining the Accessible Surfaceome for Immunophenotyping Stem Cells and Their Derivatives
Fujinaka, Chelsea M, Waas, Matthew, Gundry, Rebekah L
Published in Methods in molecular biology (Clifton, N.J.) (2018)
Published in Methods in molecular biology (Clifton, N.J.) (2018)
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Journal Article
Importance of evaluating protein glycosylation in pluripotent stem cell-derived cardiomyocytes for research and clinical applications
Kelly, Maia I., Albahrani, Mustafa, Castro, Chase, Poon, Ellen, Yan, Bin, Littrell, Jack, Waas, Matthew, Boheler, Kenneth R., Gundry, Rebekah L.
Published in Pflügers Archiv (01.07.2021)
Published in Pflügers Archiv (01.07.2021)
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Journal Article
N‐glycoprotein surfaceome of human induced pluripotent stem cell derived hepatic endoderm
Mallanna, Sunil K., Waas, Matthew, Duncan, Stephen A., Gundry, Rebekah L.
Published in Proteomics (Weinheim) (01.03.2017)
Published in Proteomics (Weinheim) (01.03.2017)
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