chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
Schep, Alicia N, Wu, Beijing, Buenrostro, Jason D, Greenleaf, William J
Published in Nature methods (01.10.2017)
Published in Nature methods (01.10.2017)
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Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
Buenrostro, Jason D., Corces, M. Ryan, Lareau, Caleb A., Wu, Beijing, Schep, Alicia N., Aryee, Martin J., Majeti, Ravindra, Chang, Howard Y., Greenleaf, William J.
Published in Cell (31.05.2018)
Published in Cell (31.05.2018)
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ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide
Buenrostro, Jason D, Wu, Beijing, Chang, Howard Y, Greenleaf, William J
Published in Current protocols in molecular biology (Print) (01.01.2015)
Published in Current protocols in molecular biology (Print) (01.01.2015)
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Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution
Corces, M Ryan, Buenrostro, Jason D, Wu, Beijing, Greenside, Peyton G, Chan, Steven M, Koenig, Julie L, Snyder, Michael P, Pritchard, Jonathan K, Kundaje, Anshul, Greenleaf, William J, Majeti, Ravindra, Chang, Howard Y
Published in Nature genetics (01.10.2016)
Published in Nature genetics (01.10.2016)
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An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
Corces, M Ryan, Trevino, Alexandro E, Hamilton, Emily G, Greenside, Peyton G, Sinnott-Armstrong, Nicholas A, Vesuna, Sam, Satpathy, Ansuman T, Rubin, Adam J, Montine, Kathleen S, Wu, Beijing, Kathiria, Arwa, Cho, Seung Woo, Mumbach, Maxwell R, Carter, Ava C, Kasowski, Maya, Orloff, Lisa A, Risca, Viviana I, Kundaje, Anshul, Khavari, Paul A, Montine, Thomas J, Greenleaf, William J, Chang, Howard Y
Published in Nature methods (01.10.2017)
Published in Nature methods (01.10.2017)
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Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks
Rubin, Adam J., Parker, Kevin R., Satpathy, Ansuman T., Qi, Yanyan, Wu, Beijing, Ong, Alvin J., Mumbach, Maxwell R., Ji, Andrew L., Kim, Daniel S., Cho, Seung Woo, Zarnegar, Brian J., Greenleaf, William J., Chang, Howard Y., Khavari, Paul A.
Published in Cell (10.01.2019)
Published in Cell (10.01.2019)
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Landscape of stimulation-responsive chromatin across diverse human immune cells
Calderon, Diego, Nguyen, Michelle L. T., Mezger, Anja, Kathiria, Arwa, Müller, Fabian, Nguyen, Vinh, Lescano, Ninnia, Wu, Beijing, Trombetta, John, Ribado, Jessica V., Knowles, David A., Gao, Ziyue, Blaeschke, Franziska, Parent, Audrey V., Burt, Trevor D., Anderson, Mark S., Criswell, Lindsey A., Greenleaf, William J., Marson, Alexander, Pritchard, Jonathan K.
Published in Nature genetics (01.10.2019)
Published in Nature genetics (01.10.2019)
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Roles of the developmental regulator unc-62/Homothorax in limiting longevity in Caenorhabditis elegans
Van Nostrand, Eric L, Sánchez-Blanco, Adolfo, Wu, Beijing, Nguyen, Andy, Kim, Stuart K
Published in PLoS genetics (01.02.2013)
Published in PLoS genetics (01.02.2013)
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Single-cell chromatin accessibility reveals principles of regulatory variation
Buenrostro, Jason D., Wu, Beijing, Litzenburger, Ulrike M., Ruff, Dave, Gonzales, Michael L., Snyder, Michael P., Chang, Howard Y., Greenleaf, William J.
Published in Nature (London) (23.07.2015)
Published in Nature (London) (23.07.2015)
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Single-cell epigenomic variability reveals functional cancer heterogeneity
Litzenburger, Ulrike M, Buenrostro, Jason D, Wu, Beijing, Shen, Ying, Sheffield, Nathan C, Kathiria, Arwa, Greenleaf, William J, Chang, Howard Y
Published in Genome Biology (24.01.2017)
Published in Genome Biology (24.01.2017)
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Transcript-indexed ATAC-seq for precision immune profiling
Satpathy, Ansuman T., Saligrama, Naresha, Buenrostro, Jason D., Wei, Yuning, Wu, Beijing, Rubin, Adam J., Granja, Jeffrey M., Lareau, Caleb A., Li, Rui, Qi, Yanyan, Parker, Kevin R., Mumbach, Maxwell R., Serratelli, William S., Gennert, David G., Schep, Alicia N., Corces, M. Ryan, Khodadoust, Michael S., Kim, Youn H., Khavari, Paul A., Greenleaf, William J., Davis, Mark M., Chang, Howard Y.
Published in Nature medicine (01.05.2018)
Published in Nature medicine (01.05.2018)
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Regulatory analysis of the C. elegans genome with spatiotemporal resolution
Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, Ma, Lijia, Murray, John I., Reinke, Valerie, Waterston, Robert H., Snyder, Michael
Published in Nature (London) (28.08.2014)
Published in Nature (London) (28.08.2014)
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Correction: Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution
Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, Ma, Lijia, Murray, John I., Reinke, Valerie, Waterston, Robert H., Snyder, Michael
Published in Nature (London) (03.12.2015)
Published in Nature (London) (03.12.2015)
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Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution
Araya, Carlos L, Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P, Xie, Dan, Ma, Lijia, Murray, John I, Reinke, Valerie, Waterston, Robert H, Snyder, Michael
Published in Nature (London) (03.12.2015)
Published in Nature (London) (03.12.2015)
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Erratum: Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution
Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, Ma, Lijia, Murray, John I., Reinke, Valerie, Waterston, Robert H., Snyder, Michael
Published in Nature (London) (11.11.2015)
Published in Nature (London) (11.11.2015)
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Spectroscopic Study of Anchoring Aromatic Residues in Membrane Proteins and Peptides: Applications to Protein Folding and Vesicle Disruption
Kim, Judy E., Sanchez, Katheryn M., Schlamadinger, Diana E., Gable, Jonathan E., Wu, Beijing
Published in Biophysical journal (01.01.2010)
Published in Biophysical journal (01.01.2010)
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No-Reference Quality Assessment of Enhanced Images
Li, Leida, Shen, Wei, Gu, Ke, Wu, Jinjian, Chen, Beijing, Zhang, Jianying
Published in China communications (01.09.2016)
Published in China communications (01.09.2016)
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The dynamics of changes in starch and lipid droplets and sub-cellular localization of _amylase during the growth of lily bulbs
Wu Shasha, Beijing Forestry University, Beijing (China), College of Landscape Architecture, Wu Jindi, Beijing Forestry University, Beijing (China), College of Landscape Architecture, Jiao Xuehui, Beijing Forestry University, Beijing (China), College of Landscape Architecture
Published in Agricultural sciences in China (01.04.2012)
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Published in Agricultural sciences in China (01.04.2012)
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