Gene set analysis of genome-wide association studies: Methodological issues and perspectives
Wang, Lily, Jia, Peilin, Wolfinger, Russell D., Chen, Xi, Zhao, Zhongming
Published in Genomics (San Diego, Calif.) (01.07.2011)
Published in Genomics (San Diego, Calif.) (01.07.2011)
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Journal Article
Global Analysis of Arabidopsis Gene Expression Uncovers a Complex Array of Changes Impacting Pathogen Response and Cell Cycle during Geminivirus Infection
Ascencio-Ibáñez, José Trinidad, Sozzani, Rosangela, Lee, Tae-Jin, Chu, Tzu-Ming, Wolfinger, Russell D, Cella, Rino, Hanley-Bowdoin, Linda
Published in Plant physiology (Bethesda) (01.09.2008)
Published in Plant physiology (Bethesda) (01.09.2008)
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Journal Article
A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Yu, Ying, Fuscoe, James C, Zhao, Chen, Guo, Chao, Jia, Meiwen, Qing, Tao, Bannon, Desmond I, Lancashire, Lee, Bao, Wenjun, Du, Tingting, Luo, Heng, Su, Zhenqiang, Jones, Wendell D, Moland, Carrie L, Branham, William S, Qian, Feng, Ning, Baitang, Li, Yan, Hong, Huixiao, Guo, Lei, Mei, Nan, Shi, Tieliu, Wang, Kevin Y, Wolfinger, Russell D, Nikolsky, Yuri, Walker, Stephen J, Duerksen-Hughes, Penelope, Mason, Christopher E, Tong, Weida, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Shi, Leming, Wang, Charles
Published in Nature communications (10.02.2014)
Published in Nature communications (10.02.2014)
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Breeding-assisted genomics: Applying meta-GWAS for milling and baking quality in CIMMYT wheat breeding program
Battenfield, Sarah D, Sheridan, Jaime L, Silva, Luciano D C E, Miclaus, Kelci J, Dreisigacker, Susanne, Wolfinger, Russell D, Peña, Roberto J, Singh, Ravi P, Jackson, Eric W, Fritz, Allan K, Guzmán, Carlos, Poland, Jesse A
Published in PloS one (29.11.2018)
Published in PloS one (29.11.2018)
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Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project
Patterson, Tucker A, Lobenhofer, Edward K, Fulmer-Smentek, Stephanie B, Collins, Patrick J, Chu, Tzu-Ming, Bao, Wenjun, Fang, Hong, Kawasaki, Ernest S, Hager, Janet, Tikhonova, Irina R, Walker, Stephen J, Zhang, Liang, Hurban, Patrick, de Longueville, Francoise, Fuscoe, James C, Tong, Weida, Shi, Leming, Wolfinger, Russell D
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Journal Article
Geographical genomics of human leukocyte gene expression variation in southern Morocco
Lee, Sang H, Jadallah, Sami J, Wolfinger, Russell D, Gibson, Greg, Visscher, Peter M, Miclaus, Kelci, Goldstein, David B, Martin, Hilary C, Idaghdour, Youssef, Czika, Wendy, Shianna, Kevin V
Published in Nature genetics (01.01.2010)
Published in Nature genetics (01.01.2010)
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Journal Article
Technical reproducibility of genotyping SNP arrays used in genome-wide association studies
Hong, Huixiao, Xu, Lei, Liu, Jie, Jones, Wendell D, Su, Zhenqiang, Ning, Baitang, Perkins, Roger, Ge, Weigong, Miclaus, Kelci, Zhang, Li, Park, Kyunghee, Green, Bridgett, Han, Tao, Fang, Hong, Lambert, Christophe G, Vega, Silvia C, Lin, Simon M, Jafari, Nadereh, Czika, Wendy, Wolfinger, Russell D, Goodsaid, Federico, Tong, Weida, Shi, Leming
Published in PloS one (07.09.2012)
Published in PloS one (07.09.2012)
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Journal Article
Statistical Analysis of Relative Labeled Mass Spectrometry Data from Complex Samples Using ANOVA
Oberg, Ann L, Mahoney, Douglas W, Eckel-Passow, Jeanette E, Malone, Christopher J, Wolfinger, Russell D, Hill, Elizabeth G, Cooper, Leslie T, Onuma, Oyere K, Spiro, Craig, Therneau, Terry M, Bergen, III, H. Robert
Published in Journal of proteome research (01.01.2008)
Published in Journal of proteome research (01.01.2008)
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Automatic text classification of drug-induced liver injury using document-term matrix and XGBoost
Chen, Minjun, Wu, Yue, Wingerd, Byron, Liu, Zhichao, Xu, Joshua, Thakkar, Shraddha, Pedersen, Thomas J., Donnelly, Tom, Mann, Nicholas, Tong, Weida, Wolfinger, Russell D., Bao, Wenjun
Published in Frontiers in artificial intelligence (03.06.2024)
Published in Frontiers in artificial intelligence (03.06.2024)
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Journal Article
Two approaches for estimating the lower limit of quantitation (LLOQ) of microRNA levels assayed as exploratory biomarkers by RT-qPCR
Wolfinger, Russell D, Beedanagari, Sudheer, Boitier, Eric, Chen, Tao, Couttet, Philippe, Ellinger-Ziegelbauer, Heidrun, Guillemain, Gregory, Mariet, Claire, Mouritzen, Peter, O'Lone, Raegan, Pine, P Scott, Sharapova, Tatiana, Yan, Jian, Yuen, Peter S, Thompson, Karol L
Published in BMC biotechnology (02.02.2018)
Published in BMC biotechnology (02.02.2018)
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Journal Article
An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies
WANG, Lily, PEILIN JIA, WOLFINGER, Russell D, XI CHEN, GRAYSON, Britney L, AUNE, Thomas M, ZHONGMING ZHAO
Published in Bioinformatics (Oxford, England) (01.03.2011)
Published in Bioinformatics (Oxford, England) (01.03.2011)
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Journal Article
Summarizing the incidence of adverse events using volcano plots and time intervals
Zink, Richard C, Wolfinger, Russell D, Mann, Geoffrey
Published in Clinical trials (London, England) (01.06.2013)
Published in Clinical trials (London, England) (01.06.2013)
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Journal Article
Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories
Boedigheimer, Michael J, Wolfinger, Russell D, Bass, Michael B, Bushel, Pierre R, Chou, Jeff W, Cooper, Matthew, Corton, J Christopher, Fostel, Jennifer, Hester, Susan, Lee, Janice S, Liu, Fenglong, Liu, Jie, Qian, Hui-Rong, Quackenbush, John, Pettit, Syril, Thompson, Karol L
Published in BMC genomics (12.06.2008)
Published in BMC genomics (12.06.2008)
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Evaluation of external RNA controls for the assessment of microarray performance
Tong, Weida, Lucas, Anne Bergstrom, Shippy, Richard, Fan, Xiaohui, Fang, Hong, Hong, Huixiao, Orr, Michael S, Chu, Tzu-Ming, Guo, Xu, Collins, Patrick J, Sun, Yongming Andrew, Wang, Sue-Jane, Bao, Wenjun, Wolfinger, Russell D, Shchegrova, Svetlana, Guo, Lei, Warrington, Janet A, Shi, Leming
Published in Nature biotechnology (01.09.2006)
Published in Nature biotechnology (01.09.2006)
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Journal Article
A genomics-based analysis of relative potencies of dioxin-like compounds in primary rat hepatocytes
Rowlands, J Craig, Budinsky, Robert, Gollapudi, Bhaskar, Black, Michael B, Wolfinger, Russell D, Cukovic, Daniela, Dombkowski, Alan, Thompson, Chad M, Urban, Jonathan D, Thomas, Russell S
Published in Toxicological sciences (01.12.2013)
Published in Toxicological sciences (01.12.2013)
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Journal Article
Genome-wide analysis of human HSF1 signaling reveals a transcriptional program linked to cellular adaptation and survival
Page, Todd J, Sikder, Devanjan, Yang, Longlong, Pluta, Linda, Wolfinger, Russell D, Kodadek, Thomas, Thomas, Russell S
Published in Molecular bioSystems (2006)
Published in Molecular bioSystems (2006)
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Journal Article
Consequences of reductive evolution for gene expression in an obligate endosymbiont
Wilcox, Jennifer L., Dunbar, Helen E., Wolfinger, Russell D., Moran, Nancy A.
Published in Molecular microbiology (01.06.2003)
Published in Molecular microbiology (01.06.2003)
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