Defining the cellular lineage hierarchy in the interfollicular epidermis of adult skin
Sada, Aiko, Jacob, Fadi, Leung, Eva, Wang, Sherry, White, Brian S., Shalloway, David, Tumbar, Tudorita
Published in Nature cell biology (01.06.2016)
Published in Nature cell biology (01.06.2016)
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Journal Article
SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution
Miller, Christopher A, White, Brian S, Dees, Nathan D, Griffith, Malachi, Welch, John S, Griffith, Obi L, Vij, Ravi, Tomasson, Michael H, Graubert, Timothy A, Walter, Matthew J, Ellis, Matthew J, Schierding, William, DiPersio, John F, Ley, Timothy J, Mardis, Elaine R, Wilson, Richard K, Ding, Li
Published in PLoS computational biology (01.08.2014)
Published in PLoS computational biology (01.08.2014)
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Journal Article
Mutant U2AF1 Expression Alters Hematopoiesis and Pre-mRNA Splicing In Vivo
Shirai, Cara Lunn, Ley, James N., White, Brian S., Kim, Sanghyun, Tibbitts, Justin, Shao, Jin, Ndonwi, Matthew, Wadugu, Brian, Duncavage, Eric J., Okeyo-Owuor, Theresa, Liu, Tuoen, Griffith, Malachi, McGrath, Sean, Magrini, Vincent, Fulton, Robert S., Fronick, Catrina, O’Laughlin, Michelle, Graubert, Timothy A., Walter, Matthew J.
Published in Cancer cell (11.05.2015)
Published in Cancer cell (11.05.2015)
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Journal Article
Recurrent somatic mutations affecting B-cell receptor signaling pathway genes in follicular lymphoma
Krysiak, Kilannin, Gomez, Felicia, White, Brian S., Matlock, Matthew, Miller, Christopher A., Trani, Lee, Fronick, Catrina C., Fulton, Robert S., Kreisel, Friederike, Cashen, Amanda F., Carson, Kenneth R., Berrien-Elliott, Melissa M., Bartlett, Nancy L., Griffith, Malachi, Griffith, Obi L., Fehniger, Todd A.
Published in Blood (26.01.2017)
Published in Blood (26.01.2017)
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Journal Article
Mutant U2AF1-expressing cells are sensitive to pharmacological modulation of the spliceosome
Shirai, Cara Lunn, White, Brian S., Tripathi, Manorama, Tapia, Roberto, Ley, James N., Ndonwi, Matthew, Kim, Sanghyun, Shao, Jin, Carver, Alexa, Saez, Borja, Fulton, Robert S., Fronick, Catrina, O’Laughlin, Michelle, Lagisetti, Chandraiah, Webb, Thomas R., Graubert, Timothy A., Walter, Matthew J.
Published in Nature communications (09.01.2017)
Published in Nature communications (09.01.2017)
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Journal Article
Deep learning features encode interpretable morphologies within histological images
Foroughi pour, Ali, White, Brian S., Park, Jonghanne, Sheridan, Todd B., Chuang, Jeffrey H.
Published in Scientific reports (08.06.2022)
Published in Scientific reports (08.06.2022)
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Journal Article
Enhlink infers distal and context-specific enhancer-promoter linkages
Poirion, Olivier B, Zuo, Wulin, Spruce, Catrina, Baker, Candice N, Daigle, Sandra L, Olson, Ashley, Skelly, Daniel A, Chesler, Elissa J, Baker, Christopher L, White, Brian S
Published in Genome Biology (02.09.2024)
Published in Genome Biology (02.09.2024)
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Journal Article
RAPID-SELEX for RNA aptamers
Szeto, Kylan, Latulippe, David R, Ozer, Abdullah, Pagano, John M, White, Brian S, Shalloway, David, Lis, John T, Craighead, Harold G
Published in PloS one (20.12.2013)
Published in PloS one (20.12.2013)
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Journal Article
Molecular response in newly diagnosed chronic-phase chronic myeloid leukemia: prediction modeling and pathway analysis
Radich, Jerald P, Wall, Matthew, Branford, Susan, Campbell, Catarina D, Chaturvedi, Shalini, DeAngelo, Daniel J, Deininger, Michael, Guinney, Justin, Hochhaus, Andreas, Hughes, Timothy P, Kantarjian, Hagop M, Larson, Richard A, Li, Sai, Maegawa, Rodrigo, Mishra, Kaushal, Obourn, Vanessa, Pinilla-Ibarz, Javier, Purkayastha, Das, Sadek, Islam, Saglio, Giuseppe, Shrestha, Alok, White, Brian S, Druker, Brian J
Published in Haematologica (Roma) (01.06.2023)
Published in Haematologica (Roma) (01.06.2023)
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Journal Article
Defining NELF-E RNA binding in HIV-1 and promoter-proximal pause regions
Pagano, John M, Kwak, Hojoong, Waters, Colin T, Sprouse, Rebekka O, White, Brian S, Ozer, Abdullah, Szeto, Kylan, Shalloway, David, Craighead, Harold G, Lis, John T
Published in PLoS genetics (01.01.2014)
Published in PLoS genetics (01.01.2014)
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Journal Article
Runx1 and p21 synergistically limit the extent of hair follicle stem cell quiescence in vivo
Lee, Jayhun, Hoi, Charlene S. L., Lilja, Karin C., White, Brian S., Lee, Song Eun, Shalloway, David, Tumbar, Tudorita
Published in Proceedings of the National Academy of Sciences - PNAS (19.03.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (19.03.2013)
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Journal Article
A multiple myeloma-specific capture sequencing platform discovers novel translocations and frequent, risk-associated point mutations in IGLL5
White, Brian S., Lanc, Irena, O’Neal, Julie, Gupta, Harshath, Fulton, Robert S., Schmidt, Heather, Fronick, Catrina, Belter, Edward A., Fiala, Mark, King, Justin, Ahmann, Greg J., DeRome, Mary, Mardis, Elaine R., Vij, Ravi, DiPersio, John F., Levy, Joan, Auclair, Daniel, Tomasson, Michael H.
Published in Blood cancer journal (New York) (21.03.2018)
Published in Blood cancer journal (New York) (21.03.2018)
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Journal Article
Expression profiling of snoRNAs in normal hematopoiesis and AML
Warner, Wayne A., Spencer, David H., Trissal, Maria, White, Brian S., Helton, Nichole, Ley, Timothy J., Link, Daniel C.
Published in Blood advances (23.01.2018)
Published in Blood advances (23.01.2018)
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Journal Article
Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop
Alexander, Roger P, Kitchen, Robert R, Tosar, Juan Pablo, Roth, Matthew, Mestdagh, Pieter, Max, Klaas E A, Rozowsky, Joel, Kaczor-Urbanowicz, Karolina Elżbieta, Chang, Justin, Balaj, Leonora, Losic, Bojan, Van Nostrand, Eric L, LaPlante, Emily, Mateescu, Bogdan, White, Brian S, Yu, Rongshan, Milosavljevic, Aleksander, Stolovitzky, Gustavo, Spengler, Ryan M
Published in Frontiers in genetics (03.01.2022)
Published in Frontiers in genetics (03.01.2022)
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Journal Article
Bayesian multi-source regression and monocyte-associated gene expression predict BCL-2 inhibitor resistance in acute myeloid leukemia
White, Brian S., Khan, Suleiman A., Mason, Mike J., Ammad-ud-din, Muhammad, Potdar, Swapnil, Malani, Disha, Kuusanmäki, Heikki, Druker, Brian J., Heckman, Caroline, Kallioniemi, Olli, Kurtz, Stephen E., Porkka, Kimmo, Tognon, Cristina E., Tyner, Jeffrey W., Aittokallio, Tero, Wennerberg, Krister, Guinney, Justin
Published in NPJ precision oncology (23.07.2021)
Published in NPJ precision oncology (23.07.2021)
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Journal Article
Density-dependent cooperative non-specific binding in solid-phase SELEX affinity selection
Ozer, Abdullah, White, Brian S., Lis, John T., Shalloway, David
Published in Nucleic acids research (01.08.2013)
Published in Nucleic acids research (01.08.2013)
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Journal Article
Discovering aptamers by cell-SELEX against human soluble growth factors ectopically expressed on yeast cell surface
Meng, Hsien-Wei, Pagano, John M, White, Brian S, Toyoda, Yoshiko, Min, Irene M, Craighead, Harold G, Shalloway, David, Lis, John T, Xiao, Kai, Jin, Moonsoo M
Published in PloS one (27.03.2014)
Published in PloS one (27.03.2014)
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