MSIsensor: microsatellite instability detection using paired tumor-normal sequence data
Niu, Beifang, Ye, Kai, Zhang, Qunyuan, Lu, Charles, Xie, Mingchao, McLellan, Michael D, Wendl, Michael C, Ding, Li
Published in Bioinformatics (01.04.2014)
Published in Bioinformatics (01.04.2014)
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Mutational landscape and significance across 12 major cancer types
Kandoth, Cyriac, McLellan, Michael D, Vandin, Fabio, Ye, Kai, Niu, Beifang, Lu, Charles, Xie, Mingchao, Zhang, Qunyuan, McMichael, Joshua F, Wyczalkowski, Matthew A, Leiserson, Mark D M, Miller, Christopher A, Welch, John S, Walter, Matthew J, Wendl, Michael C, Ley, Timothy J, Wilson, Richard K, Raphael, Benjamin J, Ding, Li
Published in Nature (London) (17.10.2013)
Published in Nature (London) (17.10.2013)
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Expanding the computational toolbox for mining cancer genomes
Ding, Li, Wendl, Michael C, McMichael, Joshua F, Raphael, Benjamin J
Published in Nature reviews. Genetics (01.08.2014)
Published in Nature reviews. Genetics (01.08.2014)
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MuSiC: identifying mutational significance in cancer genomes
Dees, Nathan D, Zhang, Qunyuan, Kandoth, Cyriac, Wendl, Michael C, Schierding, William, Koboldt, Daniel C, Mooney, Thomas B, Callaway, Matthew B, Dooling, David, Mardis, Elaine R, Wilson, Richard K, Ding, Li
Published in Genome research (01.08.2012)
Published in Genome research (01.08.2012)
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Age-related mutations associated with clonal hematopoietic expansion and malignancies
Xie, Mingchao, Lu, Charles, Wang, Jiayin, McLellan, Michael D, Johnson, Kimberly J, Wendl, Michael C, McMichael, Joshua F, Schmidt, Heather K, Yellapantula, Venkata, Miller, Christopher A, Ozenberger, Bradley A, Welch, John S, Link, Daniel C, Walter, Matthew J, Mardis, Elaine R, Dipersio, John F, Chen, Feng, Wilson, Richard K, Ley, Timothy J, Ding, Li
Published in Nature medicine (01.12.2014)
Published in Nature medicine (01.12.2014)
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Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases
Hoadley, Katherine A, Siegel, Marni B, Kanchi, Krishna L, Miller, Christopher A, Ding, Li, Zhao, Wei, He, Xiaping, Parker, Joel S, Wendl, Michael C, Fulton, Robert S, Demeter, Ryan T, Wilson, Richard K, Carey, Lisa A, Perou, Charles M, Mardis, Elaine R
Published in PLoS medicine (06.12.2016)
Published in PLoS medicine (06.12.2016)
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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
Chen, Ken, Wallis, John W, McLellan, Michael D, Larson, David E, Kalicki, Joelle M, Pohl, Craig S, McGrath, Sean D, Wendl, Michael C, Zhang, Qunyuan, Locke, Devin P, Shi, Xiaoqi, Fulton, Robert S, Ley, Timothy J, Wilson, Richard K, Ding, Li, Mardis, Elaine R
Published in Nature methods (01.09.2009)
Published in Nature methods (01.09.2009)
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Protein-structure-guided discovery of functional mutations across 19 cancer types
Niu, Beifang, Scott, Adam D, Sengupta, Sohini, Bailey, Matthew H, Batra, Prag, Ning, Jie, Wyczalkowski, Matthew A, Liang, Wen-Wei, Zhang, Qunyuan, McLellan, Michael D, Sun, Sam Q, Tripathi, Piyush, Lou, Carolyn, Ye, Kai, Mashl, R Jay, Wallis, John, Wendl, Michael C, Chen, Feng, Ding, Li
Published in Nature genetics (01.08.2016)
Published in Nature genetics (01.08.2016)
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Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting
MATSUSHITA, Hirokazu, VESELY, Matthew D, HUNDAL, Jasreet, WENDL, Michael C, DEMETER, Ryan, WYLIE, Todd, ALLISON, James P, SMYTH, Mark J, OLD, Lloyd J, MARDIS, Elaine R, SCHREIBER, Robert D, KOBOLDT, Daniel C, RICKERT, Charles G, UPPALURI, Ravindra, MAGRINI, Vincent J, ARTHUR, Cora D, MICHAEL WHITE, J, CHEN, Yee-Shiuan, SHEA, Lauren K
Published in Nature (London) (08.02.2012)
Published in Nature (London) (08.02.2012)
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Background Mutations in Parental Cells Account for Most of the Genetic Heterogeneity of Induced Pluripotent Stem Cells
Young, Margaret A., Larson, David E., Sun, Chiao-Wang, George, Daniel R., Ding, Li, Miller, Christopher A., Lin, Ling, Pawlik, Kevin M., Chen, Ken, Fan, Xian, Schmidt, Heather, Kalicki-Veizer, Joelle, Cook, Lisa L., Swift, Gary W., Demeter, Ryan T., Wendl, Michael C., Sands, Mark S., Mardis, Elaine R., Wilson, Richard K., Townes, Tim M., Ley, Timothy J.
Published in Cell stem cell (04.05.2012)
Published in Cell stem cell (04.05.2012)
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Pseudonymous fame
Wendl, Michael C.
Published in Science (American Association for the Advancement of Science) (25.03.2016)
Published in Science (American Association for the Advancement of Science) (25.03.2016)
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Advances for studying clonal evolution in cancer
Ding, Li, Raphael, Benjamin J, Chen, Feng, Wendl, Michael C
Published in Cancer letters (01.11.2013)
Published in Cancer letters (01.11.2013)
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Systematic discovery of complex insertions and deletions in human cancers
Ye, Kai, Wang, Jiayin, Jayasinghe, Reyka, Lameijer, Eric-Wubbo, McMichael, Joshua F, Ning, Jie, McLellan, Michael D, Xie, Mingchao, Cao, Song, Yellapantula, Venkata, Huang, Kuan-lin, Scott, Adam, Foltz, Steven, Niu, Beifang, Johnson, Kimberly J, Moed, Matthijs, Slagboom, P Eline, Chen, Feng, Wendl, Michael C, Ding, Li
Published in Nature medicine (01.01.2016)
Published in Nature medicine (01.01.2016)
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Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing
LI DING, LEY, Timothy J, MCMICHAEL, Joshua F, WALLIS, John W, LU, Charles, DONG SHEN, HARRIS, Christopher C, DOOLING, David J, FULTON, Robert S, FULTON, Lucinda L, KEN CHEN, SCHMIDT, Heather, LARSON, David E, KALICKI-VEIZER, Joelle, MAGRINI, Vincent J, COOK, Lisa, MCGRATH, Sean D, VICKERY, Tammi L, WENDL, Michael C, HEATH, Sharon, WATSON, Mark A, LINK, Daniel C, TOMASSON, Michael H, MILLER, Christopher A, SHANNON, William D, PAYTON, Jacqueline E, KULKARNI, Shashikant, WESTERVELT, Peter, WALTER, Matthew J, GRAUBERT, Timothy A, MARDIS, Elaine R, WILSON, Richard K, DIPERSIO, John F, KOBOLDT, Daniel C, WELCH, John S, RITCHEY, Julie K, YOUNG, Margaret A, LAMPRECHT, Tamara, MCLELLAN, Michael D
Published in Nature (London) (11.01.2012)
Published in Nature (London) (11.01.2012)
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Moving pan-cancer studies from basic research toward the clinic
Chen, Feng, Wendl, Michael C, Wyczalkowski, Matthew A, Bailey, Matthew H, Li, Yize, Ding, Li
Published in Nature cancer (01.09.2021)
Published in Nature cancer (01.09.2021)
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Discovery of driver non-coding splice-site-creating mutations in cancer
Cao, Song, Zhou, Daniel Cui, Oh, Clara, Jayasinghe, Reyka G, Zhao, Yanyan, Yoon, Christopher J, Wyczalkowski, Matthew A, Bailey, Matthew H, Tsou, Terrence, Gao, Qingsong, Malone, Andrew, Reynolds, Sheila, Shmulevich, Ilya, Wendl, Michael C, Chen, Feng, Ding, Li
Published in Nature communications (04.11.2020)
Published in Nature communications (04.11.2020)
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MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data
Han, Xinyin, Zhang, Shuying, Zhou, Daniel Cui, Wang, Dongliang, He, Xiaoyu, Yuan, Danyang, Li, Ruilin, He, Jiayin, Duan, Xiaohong, Wendl, Michael C, Ding, Li, Niu, Beifang
Published in Briefings in bioinformatics (02.09.2021)
Published in Briefings in bioinformatics (02.09.2021)
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Divergent viral presentation among human tumors and adjacent normal tissues
Cao, Song, Wendl, Michael C, Wyczalkowski, Matthew A, Wylie, Kristine, Ye, Kai, Jayasinghe, Reyka, Xie, Mingchao, Wu, Song, Niu, Beifang, Grubb, 3rd, Robert, Johnson, Kimberly J, Gay, Hiram, Chen, Ken, Rader, Janet S, Dipersio, John F, Chen, Feng, Ding, Li
Published in Scientific reports (24.06.2016)
Published in Scientific reports (24.06.2016)
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Epigenetic regulation during cancer transitions across 11 tumour types
Terekhanova, Nadezhda V, Karpova, Alla, Liang, Wen-Wei, Strzalkowski, Alexander, Chen, Siqi, Li, Yize, Southard-Smith, Austin N, Iglesia, Michael D, Wendl, Michael C, Jayasinghe, Reyka G, Liu, Jingxian, Song, Yizhe, Cao, Song, Houston, Andrew, Liu, Xiuting, Wyczalkowski, Matthew A, Lu, Rita Jui-Hsien, Caravan, Wagma, Shinkle, Andrew, Naser Al Deen, Nataly, Herndon, John M, Mudd, Jacqueline, Ma, Cong, Sarkar, Hirak, Sato, Kazuhito, Ibrahim, Omar M, Mo, Chia-Kuei, Chasnoff, Sara E, Porta-Pardo, Eduard, Held, Jason M, Pachynski, Russell, Schwarz, Julie K, Gillanders, William E, Kim, Albert H, Vij, Ravi, DiPersio, John F, Puram, Sidharth V, Chheda, Milan G, Fuh, Katherine C, DeNardo, David G, Fields, Ryan C, Chen, Feng, Raphael, Benjamin J, Ding, Li
Published in Nature (London) (09.11.2023)
Published in Nature (London) (09.11.2023)
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