Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
Herschkowitz, Jason I, Simin, Karl, Weigman, Victor J, Mikaelian, Igor, Usary, Jerry, Hu, Zhiyuan, Rasmussen, Karen E, Jones, Laundette P, Assefnia, Shahin, Chandrasekharan, Subhashini, Backlund, Michael G, Yin, Yuzhi, Khramtsov, Andrey I, Bastein, Roy, Quackenbush, John, Glazer, Robert I, Brown, Powel H, Green, Jeffrey E, Kopelovich, Levy, Furth, Priscilla A, Palazzo, Juan P, Olopade, Olufunmilayo I, Bernard, Philip S, Churchill, Gary A, Van Dyke, Terry, Perou, Charles M
Published in Genome biology (01.01.2007)
Published in Genome biology (01.01.2007)
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Journal Article
Allele-specific copy number analysis of tumors
Van Loo, Peter, Nordgard, Silje H., Lingjærde, Ole Christian, Russnes, Hege G., Rye, Inga H., Sun, Wei, Weigman, Victor J., Marynen, Peter, Zetterberg, Anders, Naume, Bjørn, Perou, Charles M., Børresen-Dale, Anne-Lise, Kristensen, Vessela N.
Published in Proceedings of the National Academy of Sciences - PNAS (28.09.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (28.09.2010)
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Journal Article
EGFR associated expression profiles vary with breast tumor subtype
Hoadley, Katherine A, Weigman, Victor J, Fan, Cheng, Sawyer, Lynda R, He, Xiaping, Troester, Melissa A, Sartor, Carolyn I, Rieger-House, Thais, Bernard, Philip S, Carey, Lisa A, Perou, Charles M
Published in BMC genomics (31.07.2007)
Published in BMC genomics (31.07.2007)
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Journal Article
Characterization of a Naturally Occurring Breast Cancer Subset Enriched in Epithelial-to-Mesenchymal Transition and Stem Cell Characteristics
HENNESSY, Bryan T, GONZALEZ-ANGULO, Ana-Maria, WENBIN LIU, STIVERS, David, BAGGERLY, Keith, CAREY, Mark, LLUCH, Ana, MONTEAGUDO, Carlos, XIAPING HE, WEIGMAN, Victor, CHENG FAN, PALAZZO, Juan, STEMKE-HALE, Katherine, HORTOBAGYI, Gabriel N, NOLDEN, Laura K, WANG, Nicholas J, VALERO, Vicente, GRAY, Joe W, PEROU, Charles M, MILLS, Gordon B, GILCREASE, Michael Z, KRISHNAMURTHY, Savitri, LEE, Ju-Seog, FRIDLYAND, Jane, SAHIN, Aysegul, AGARWAL, Roshan, JOY, Corwin
Published in Cancer research (Chicago, Ill.) (15.05.2009)
Published in Cancer research (Chicago, Ill.) (15.05.2009)
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Journal Article
Rb deletion in mouse mammary progenitors induces luminal-B or basal-like/EMT tumor subtypes depending on p53 status
Jiang, Zhe, Deng, Tao, Jones, Robert, Li, Huiqin, Herschkowitz, Jason I, Liu, Jeff C, Weigman, Victor J, Tsao, Ming-Sound, Lane, Timothy F, Perou, Charles M, Zacksenhaus, Eldad
Published in The Journal of clinical investigation (01.09.2010)
Published in The Journal of clinical investigation (01.09.2010)
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Journal Article
Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine
Holbrook, Joanna D, Parker, Joel S, Gallagher, Kathleen T, Halsey, Wendy S, Hughes, Ashley M, Weigman, Victor J, Lebowitz, Peter F, Kumar, Rakesh
Published in Journal of translational medicine (25.07.2011)
Published in Journal of translational medicine (25.07.2011)
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Journal Article
Efficient and accurate whole genome assembly and methylome profiling of E. coli
Powers, Jason G, Weigman, Victor J, Shu, Jenny, Pufky, John M, Cox, Donald, Hurban, Patrick
Published in BMC genomics (03.10.2013)
Published in BMC genomics (03.10.2013)
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Journal Article
Basal-like Breast cancer DNA copy number losses identify genes involved in genomic instability, response to therapy, and patient survival
Weigman, Victor J., Chao, Hann-Hsiang, Shabalin, Andrey A., He, Xiaping, Parker, Joel S., Nordgard, Silje H., Grushko, Tatyana, Huo, Dezheng, Nwachukwu, Chika, Nobel, Andrew, Kristensen, Vessela N., Børresen-Dale, Anne-Lise, Olopade, Olufunmilayo I., Perou, Charles M.
Published in Breast cancer research and treatment (01.06.2012)
Published in Breast cancer research and treatment (01.06.2012)
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Journal Article
High-Throughput Detection of Clinically Relevant Mutations in Archived Tumor Samples by Multiplexed PCR and Next-Generation Sequencing
BOURGON, Richard, SHAN LU, PATEL, Rajesh, HAMPTON, Garret M, AMLER, Lukas C, YULEI WANG, YIBING YAN, LACKNER, Mark R, WEIRU WANG, WEIGMAN, Victor, WANG, David, YINGHUI GUAN, RYNER, Lisa, KOEPPEN, Hartmut
Published in Clinical cancer research (15.04.2014)
Published in Clinical cancer research (15.04.2014)
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Journal Article
Polyclonal lymphoid expansion drives paraneoplastic autoimmunity in neuroblastoma
Rosenberg, Miriam I., Greenstein, Erez, Buchkovich, Martin, Peres, Ayelet, Santoni-Rugiu, Eric, Yang, Lei, Mikl, Martin, Vaksman, Zalman, Gibbs, David L., Reshef, Dan, Salovin, Amy, Irwin, Meredith S., Naranjo, Arlene, Ulitsky, Igor, de Alarcon, Pedro A., Matthay, Katherine K., Weigman, Victor, Yaari, Gur, Panzer, Jessica A., Friedman, Nir, Maris, John M.
Published in Cell reports (Cambridge) (29.08.2023)
Published in Cell reports (Cambridge) (29.08.2023)
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Journal Article
HIF2α cooperates with RAS to promote lung tumorigenesis in mice
Kim, William Y, Perera, Samanthi, Zhou, Bing, Carretero, Julian, Yeh, Jen Jen, Heathcote, Samuel A, Jackson, Autumn L, Nikolinakos, Petros, Ospina, Beatriz, Naumov, George, Brandstetter, Kathleyn A, Weigman, Victor J, Zaghlul, Sara, Hayes, D. Neil, Padera, Robert F, Heymach, John V, Kung, Andrew L, Sharpless, Norman E, Kaelin, Jr., William G
Published in The Journal of clinical investigation (01.08.2009)
Published in The Journal of clinical investigation (01.08.2009)
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Journal Article
Abstract 4496: Genomic profiling of late stage tumors powering precision medicine in Japan
Kanai, Masashi, Schu, Matthew, Sakuma, Tomohiro, Abbott, Steven, Kou, Tadayuki, Gagnon, Ross, Halsey, Thomas, Matsumoto, Shigemi, Kamada, Mayumi, Nakatsui, Masahiko, Okuno, Yasushi, Hiroshima, Akinori, Mochizuki, Hiroaki, Hurban, Patrick, Muto, Manabu, Weigman, Victor J.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance
Eulgem, T, Weigman, V.J, Chang, H.S, McDowell, J.M, Holub, E.B, Glazebrook, J, Zhu, T, Dangl, J.L
Published in Plant physiology (Bethesda) (01.06.2004)
Published in Plant physiology (Bethesda) (01.06.2004)
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Journal Article
TMB standardization by alignment to reference standards: Phase II of the Friends of Cancer Research TMB Harmonization Project
Merino, Diana M., McShane, Lisa, Butler, Matt, Funari, Vincent Anthony, Hellmann, Matthew David, Chaudhary, Ruchi, Chen, Shu-Jen, Chen, Wangjuh Sting, Conroy, Jeffrey M., Fabrizio, David, MacConaill, Laura E, Pallavajjala, Aparna, Papin, Arnaud, Sausen, Mark, Weigman, Victor J, Xie, Mingchao, Zehir, Ahmet, Zhao, Chen, Williams, Paul M.
Published in Journal of clinical oncology (20.05.2019)
Published in Journal of clinical oncology (20.05.2019)
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Journal Article
Abstract LB-381: Effects of sequencing parameters and panel size on mutational burden calculations
Yourstone, Scott, Mola, Natalie, Weigman, Victor J.
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article
Abstract 2296: STAR-SEQR: Accurate fusion detection and support for fusion neoantigen applications
Jasper, Jeff, Powers, Jason G., Weigman, Victor J.
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article
Abstract LB-380: TMB calling in absence of matched normal: Learning germline behavior
Tian, Yiqing, Jones, Wendell, Mola, Natalie, Weigman, Victor J.
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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