JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
Castro-Mondragon, Jaime A, Riudavets-Puig, Rafael, Rauluseviciute, Ieva, Berhanu Lemma, Roza, Turchi, Laura, Blanc-Mathieu, Romain, Lucas, Jeremy, Boddie, Paul, Khan, Aziz, Manosalva Pérez, Nicolás, Fornes, Oriol, Leung, Tiffany Y, Aguirre, Alejandro, Hammal, Fayrouz, Schmelter, Daniel, Baranasic, Damir, Ballester, Benoit, Sandelin, Albin, Lenhard, Boris, Vandepoele, Klaas, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters
Li, Yifeng, Chen, Chih-Yu, Wasserman, Wyeth W
Published in Journal of computational biology (01.05.2016)
Published in Journal of computational biology (01.05.2016)
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Journal Article
JASPAR 2020: update of the open-access database of transcription factor binding profiles
Fornes, Oriol, Castro-Mondragon, Jaime A, Khan, Aziz, van der Lee, Robin, Zhang, Xi, Richmond, Phillip A, Modi, Bhavi P, Correard, Solenne, Gheorghe, Marius, Baranašić, Damir, Santana-Garcia, Walter, Tan, Ge, Chèneby, Jeanne, Ballester, Benoit, Parcy, François, Sandelin, Albin, Lenhard, Boris, Wasserman, Wyeth W, Mathelier, Anthony
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Khan, Aziz, Fornes, Oriol, Stigliani, Arnaud, Gheorghe, Marius, Castro-Mondragon, Jaime A, van der Lee, Robin, Bessy, Adrien, Chèneby, Jeanne, Kulkarni, Shubhada R, Tan, Ge, Baranasic, Damir, Arenillas, David J, Sandelin, Albin, Vandepoele, Klaas, Lenhard, Boris, Ballester, Benoît, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
Rauluseviciute, Ieva, Riudavets-Puig, Rafael, Blanc-Mathieu, Romain, Castro-Mondragon, Jaime A, Ferenc, Katalin, Kumar, Vipin, Lemma, Roza Berhanu, Lucas, Jérémy, Chèneby, Jeanne, Baranasic, Damir, Khan, Aziz, Fornes, Oriol, Gundersen, Sveinung, Johansen, Morten, Hovig, Eivind, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
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Journal Article
ExplaiNN: interpretable and transparent neural networks for genomics
Novakovsky, Gherman, Fornes, Oriol, Saraswat, Manu, Mostafavi, Sara, Wasserman, Wyeth W
Published in Genome Biology (27.06.2023)
Published in Genome Biology (27.06.2023)
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Journal Article
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
Mathelier, Anthony, Fornes, Oriol, Arenillas, David J, Chen, Chih-Yu, Denay, Grégoire, Lee, Jessica, Shi, Wenqiang, Shyr, Casper, Tan, Ge, Worsley-Hunt, Rebecca, Zhang, Allen W, Parcy, François, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
Khan, Aziz, Fornes, Oriol, Stigliani, Arnaud, Gheorghe, Marius, Castro-Mondragon, Jaime A, van der Lee, Robin, Bessy, Adrien, Chèneby, Jeanne, Kulkarni, Shubhada R, Tan, Ge, Baranasic, Damir, Arenillas, David J, Sandelin, Albin, Vandepoele, Klaas, Lenhard, Boris, Ballester, Benoît, Wasserman, Wyeth W, Parcy, François, Mathelier, Anthony
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
Mathelier, Anthony, Zhao, Xiaobei, Zhang, Allen W, Parcy, François, Worsley-Hunt, Rebecca, Arenillas, David J, Buchman, Sorana, Chen, Chih-yu, Chou, Alice, Ienasescu, Hans, Lim, Jonathan, Shyr, Casper, Tan, Ge, Zhou, Michelle, Lenhard, Boris, Sandelin, Albin, Wasserman, Wyeth W
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Biologically relevant transfer learning improves transcription factor binding prediction
Novakovsky, Gherman, Saraswat, Manu, Fornes, Oriol, Mostafavi, Sara, Wasserman, Wyeth W
Published in Genome Biology (27.09.2021)
Published in Genome Biology (27.09.2021)
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Journal Article
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
Portales-Casamar, Elodie, Thongjuea, Supat, Kwon, Andrew T, Arenillas, David, Zhao, Xiaobei, Valen, Eivind, Yusuf, Dimas, Lenhard, Boris, Wasserman, Wyeth W, Sandelin, Albin
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data
Dolzhenko, Egor, Bennett, Mark F, Richmond, Phillip A, Trost, Brett, Chen, Sai, van Vugt, Joke J F A, Nguyen, Charlotte, Narzisi, Giuseppe, Gainullin, Vladimir G, Gross, Andrew M, Lajoie, Bryan R, Taft, Ryan J, Wasserman, Wyeth W, Scherer, Stephen W, Veldink, Jan H, Bentley, David R, Yuen, Ryan K C, Bahlo, Melanie, Eberle, Michael A
Published in Genome Biology (28.04.2020)
Published in Genome Biology (28.04.2020)
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Journal Article
TFBSshape: a motif database for DNA shape features of transcription factor binding sites
Yang, Lin, Zhou, Tianyin, Dror, Iris, Mathelier, Anthony, Wasserman, Wyeth W, Gordân, Raluca, Rohs, Remo
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo
Mathelier, Anthony, Xin, Beibei, Chiu, Tsu-Pei, Yang, Lin, Rohs, Remo, Wasserman, Wyeth W.
Published in Cell systems (28.09.2016)
Published in Cell systems (28.09.2016)
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