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Diao, James A., Wang, Jason K., Chui, Wan Fung, Mountain, Victoria, Gullapally, Sai Chowdary, Srinivasan, Ramprakash, Mitchell, Richard N., Glass, Benjamin, Hoffman, Sara, Rao, Sudha K., Maheshwari, Chirag, Lahiri, Abhik, Prakash, Aaditya, McLoughlin, Ryan, Kerner, Jennifer K., Resnick, Murray B., Montalto, Michael C., Khosla, Aditya, Wapinski, Ilan N., Beck, Andrew H., Elliott, Hunter L., Taylor-Weiner, Amaro
Published in Nature communications (12.03.2021)
Published in Nature communications (12.03.2021)
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A Machine Learning Approach Enables Quantitative Measurement of Liver Histology and Disease Monitoring in NASH
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Published in Hepatology (Baltimore, Md.) (01.07.2021)
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Combination Therapies Including Cilofexor and Firsocostat for Bridging Fibrosis and Cirrhosis Attributable to NASH
Loomba, Rohit, Noureddin, Mazen, Kowdley, Kris V., Kohli, Anita, Sheikh, Aasim, Neff, Guy, Bhandari, Bal Raj, Gunn, Nadege, Caldwell, Stephen H., Goodman, Zachary, Wapinski, Ilan, Resnick, Murray, Beck, Andrew H., Ding, Dora, Jia, Catherine, Chuang, Jen‐Chieh, Huss, Ryan S., Chung, Chuhan, Subramanian, G. Mani, Myers, Robert P., Patel, Keyur, Borg, Brian B., Ghalib, Reem, Kabler, Heidi, Poulos, John, Younes, Ziad, Elkhashab, Magdy, Hassanein, Tarek, Iyer, Rajalakshmi, Ruane, Peter, Shiffman, Mitchell L., Strasser, Simone, Wong, Vincent Wai‐Sun, Alkhouri, Naim
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Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis
Koo, Byoung-Mo, Kritikos, George, Farelli, Jeremiah D., Todor, Horia, Tong, Kenneth, Kimsey, Harvey, Wapinski, Ilan, Galardini, Marco, Cabal, Angelo, Peters, Jason M., Hachmann, Anna-Barbara, Rudner, David Z., Allen, Karen N., Typas, Athanasios, Gross, Carol A.
Published in Cell systems (22.03.2017)
Published in Cell systems (22.03.2017)
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Evolutionary principles of modular gene regulation in yeasts
Thompson, Dawn A, Roy, Sushmita, Chan, Michelle, Styczynsky, Mark P, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Thielke, Anne, Napolitano, Sara, Muller, Paul, Kellis, Manolis, Konieczka, Jay H, Wapinski, Ilan, Regev, Aviv
Published in eLife (18.06.2013)
Published in eLife (18.06.2013)
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Abundance-based Classifier for the Prediction of Mass Spectrometric Peptide Detectability Upon Enrichment (PPA)[S]
Muntel, Jan, Boswell, Sarah A., Tang, Shaojun, Ahmed, Saima, Wapinski, Ilan, Foley, Greg, Steen, Hanno, Springer, Michael
Published in Molecular & cellular proteomics (01.02.2015)
Published in Molecular & cellular proteomics (01.02.2015)
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Comparative analysis of Mycobacterium and related Actinomycetes yields insight into the evolution of Mycobacterium tuberculosis pathogenesis
McGuire, Abigail Manson, Weiner, Brian, Park, Sang Tae, Wapinski, Ilan, Raman, Sahadevan, Dolganov, Gregory, Peterson, Matthew, Riley, Robert, Zucker, Jeremy, Abeel, Thomas, White, Jared, Sisk, Peter, Stolte, Christian, Koehrsen, Mike, Yamamoto, Robert T, Iacobelli-Martinez, Milena, Kidd, Matthew J, Maer, Andreia M, Schoolnik, Gary K, Regev, Aviv, Galagan, James
Published in BMC genomics (28.03.2012)
Published in BMC genomics (28.03.2012)
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P1246: CELL TYPE IDENTIFICATION USING MULTIPLEX IMMUNOFLUORESCENCE (MIF) GUIDED MACHINE LEARNING IN DLBCL
Chhor, Guillaume, Vilchez, Samuel, Chang, Patrick, Novitskaya, Tatiana, Hedvat, Cyrus, Yu, Limin, Resnick, Murray, Franze, Kai, Aguilar, Brizelle, Barch, Mariya, Jesudason, Raj, Trotter, Ben, Brosnan‐Cashman, Jacqueline, Liu, Yi, Wapinski, Ilan, Giltnane, Jennifer, Hennek, Stephanie, Zijlstra, Andries, Mcginnis, Lisa
Published in HemaSphere (08.08.2023)
Published in HemaSphere (08.08.2023)
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AI powered quantification of nuclear morphology in cancers enables prediction of genome instability and prognosis
Abel, John, Jain, Suyog, Rajan, Deepta, Padigela, Harshith, Leidal, Kenneth, Prakash, Aaditya, Conway, Jake, Nercessian, Michael, Kirkup, Christian, Javed, Syed Ashar, Biju, Raymond, Harguindeguy, Natalia, Shenker, Daniel, Indorf, Nicholas, Sanghavi, Darpan, Egger, Robert, Trotter, Benjamin, Gerardin, Ylaine, Brosnan-Cashman, Jacqueline A., Dhoot, Aditya, Montalto, Michael C., Parmar, Chintan, Wapinski, Ilan, Khosla, Archit, Drage, Michael G., Yu, Limin, Taylor-Weiner, Amaro
Published in NPJ precision oncology (19.06.2024)
Published in NPJ precision oncology (19.06.2024)
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821 Machine learning models can quantify CD8 positivity in lymphocytes in melanoma clinical trial samples
Glass, Benjamin, Adam Stanford-Moore, S, Meghwal, Diksha, Agrawal, Nishant, Lin, Mary, Hedvat, Cyrus, Lee, George, Ely, Scott, Montalto, Michael, Wapinski, Ilan, Baxi, Vipul, Beck, Andrew
Published in Journal for immunotherapy of cancer (01.11.2021)
Published in Journal for immunotherapy of cancer (01.11.2021)
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Correction: Evolutionary principles of modular gene regulation in yeasts
Thompson, Dawn A, Roy, Sushmita, Chan, Michelle, Styczynski, Mark P, Pfiffner, Jenna, French, Courtney, Socha, Amanda, Thielke, Anne, Napolitano, Sara, Muller, Paul, Kellis, Manolis, Konieczka, Jay H, Wapinski, Ilan, Regev, Aviv
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Published in eLife (02.07.2013)
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Published in Genome Research (01.08.2008)
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Association of artificial intelligence-powered and manual quantification of programmed death-ligand 1 (PD-L1) expression with outcomes in patients treated with nivolumab ± ipilimumab
Baxi, Vipul, Lee, George, Duan, Chunzhe, Pandya, Dimple, Cohen, Daniel N., Edwards, Robin, Chang, Han, Li, Jun, Elliott, Hunter, Pokkalla, Harsha, Glass, Benjamin, Agrawal, Nishant, Lahiri, Abhik, Wang, Dayong, Khosla, Aditya, Wapinski, Ilan, Beck, Andrew, Montalto, Michael
Published in Modern pathology (01.11.2022)
Published in Modern pathology (01.11.2022)
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Carvunis, Anne-Ruxandra, Rolland, Thomas, Wapinski, Ilan, Calderwood, Michael A., Yildirim, Muhammed A., Simonis, Nicolas, Charloteaux, Benoit, Hidalgo, César A., Barbette, Justin, Santhanam, Balaji, Brar, Gloria A., Weissman, Jonathan S., Regev, Aviv, Thierry-Mieg, Nicolas, Cusick, Michael E., Vidal, Marc
Published in Nature (London) (19.07.2012)
Published in Nature (London) (19.07.2012)
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QUANTITATIVE AND EXPLAINABLE ARTIFICIAL INTELLIGENCE (AI)-POWERED APPROACHES TO PREDICT ULCERATIVE COLITIS DISEASE ACTIVITY FROM HEMATOXYLIN AND EOSIN (H&E)-STAINED WHOLE SLIDE IMAGES (WSI)
Sucipto, Kathleen, Khosla, Archit, Drage, Michael, Wang, Yilan, Fahy, Darren, Lin, Mary, Resnick, Murray, Montalto, Mike, Beck, Andrew, Wapinski, Ilan, Hennek, Stephanie, Jayson, Christina, Najdawi, Fedaa
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2023)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2023)
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Artificial Intelligence Enables Quantitative Assessment of Ulcerative Colitis Histology
Najdawi, Fedaa, Sucipto, Kathleen, Mistry, Pratik, Hennek, Stephanie, Jayson, Christina K.B., Lin, Mary, Fahy, Darren, Kinsey, Shawn, Wapinski, Ilan, Beck, Andrew H., Resnick, Murray B., Khosla, Archit, Drage, Michael G.
Published in Modern pathology (01.06.2023)
Published in Modern pathology (01.06.2023)
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