The challenge of antimicrobial resistance: What economics can contribute
Roope, Laurence S J, Smith, Richard D, Pouwels, Koen B, Buchanan, James, Abel, Lucy, Eibich, Peter, Butler, Christopher C, Tan, Pui San, Walker, A Sarah, Robotham, Julie V, Wordsworth, Sarah
Published in Science (American Association for the Advancement of Science) (05.04.2019)
Published in Science (American Association for the Advancement of Science) (05.04.2019)
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Journal Article
Trajectory of long covid symptoms after covid-19 vaccination: community based cohort study
Ayoubkhani, Daniel, Bermingham, Charlotte, Pouwels, Koen B, Glickman, Myer, Nafilyan, Vahé, Zaccardi, Francesco, Khunti, Kamlesh, Alwan, Nisreen A, Walker, A Sarah
Published in BMJ (Online) (18.05.2022)
Published in BMJ (Online) (18.05.2022)
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Journal Article
Impact of vaccination on new SARS-CoV-2 infections in the United Kingdom
Pritchard, Emma, Matthews, Philippa C., Stoesser, Nicole, Eyre, David W., Gethings, Owen, Vihta, Karina-Doris, Jones, Joel, House, Thomas, VanSteenHouse, Harper, Bell, Iain, Bell, John I., Newton, John N., Farrar, Jeremy, Diamond, Ian, Rourke, Emma, Studley, Ruth, Crook, Derrick, Peto, Tim E. A., Walker, A. Sarah, Pouwels, Koen B.
Published in Nature medicine (01.08.2021)
Published in Nature medicine (01.08.2021)
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Journal Article
Effect of Delta variant on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK
Pouwels, Koen B., Pritchard, Emma, Matthews, Philippa C., Stoesser, Nicole, Eyre, David W., Vihta, Karina-Doris, House, Thomas, Hay, Jodie, Bell, John I., Newton, John N., Farrar, Jeremy, Crook, Derrick, Cook, Duncan, Rourke, Emma, Studley, Ruth, Peto, Tim E. A., Diamond, Ian, Walker, A. Sarah
Published in Nature medicine (01.12.2021)
Published in Nature medicine (01.12.2021)
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Journal Article
Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers
Lumley, Sheila F, O’Donnell, Denise, Stoesser, Nicole E, Matthews, Philippa C, Howarth, Alison, Hatch, Stephanie B, Marsden, Brian D, Cox, Stuart, James, Tim, Warren, Fiona, Peck, Liam J, Ritter, Thomas G, de Toledo, Zoe, Warren, Laura, Axten, David, Cornall, Richard J, Jones, E. Yvonne, Stuart, David I, Screaton, Gavin, Ebner, Daniel, Hoosdally, Sarah, Chand, Meera, Crook, Derrick W, O’Donnell, Anne-Marie, Conlon, Christopher P, Pouwels, Koen B, Walker, A. Sarah, Peto, Tim E.A, Hopkins, Susan, Walker, Timothy M, Jeffery, Katie, Eyre, David W
Published in New England Journal of Medicine (11.02.2021)
Published in New England Journal of Medicine (11.02.2021)
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Modelling microbiome recovery after antibiotics using a stability landscape framework
Shaw, Liam P., Bassam, Hassan, Barnes, Chris P., Walker, A. Sarah, Klein, Nigel, Balloux, Francois
Published in The ISME Journal (01.07.2019)
Published in The ISME Journal (01.07.2019)
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Journal Article
Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study
Walker, Timothy M, Dr, Kohl, Thomas A, PhD, Omar, Shaheed V, MSc, Hedge, Jessica, PhD, Del Ojo Elias, Carlos, MSc, Bradley, Phelim, MPhil, Iqbal, Zamin, DPhil, Feuerriegel, Silke, PhD, Niehaus, Katherine E, MS, Wilson, Daniel J, DPhil, Clifton, David A, DPhil, Kapatai, Georgia, PhD, Ip, Camilla L C, PhD, Bowden, Rory, PhD, Drobniewski, Francis A, PhD, Allix-Béguec, Caroline, PhD, Gaudin, Cyril, PhD, Parkhill, Julian, PhD, Diel, Roland, PhD, Supply, Philip, PhD, Crook, Derrick W, FRCPath, Smith, E Grace, FRCPath, Walker, A Sarah, PhD, Ismail, Nazir, FCPath, Niemann, Stefan, PhD, Peto, Tim E A, FRCP
Published in The Lancet infectious diseases (01.10.2015)
Published in The Lancet infectious diseases (01.10.2015)
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Assessment of Second-Line Antiretroviral Regimens for HIV Therapy in Africa
Paton, Nicholas I, Kityo, Cissy, Hoppe, Anne, Reid, Andrew, Kambugu, Andrew, Lugemwa, Abbas, van Oosterhout, Joep J, Kiconco, Mary, Siika, Abraham, Mwebaze, Raymond, Abwola, Mary, Abongomera, George, Mweemba, Aggrey, Alima, Hillary, Atwongyeire, Dickens, Nyirenda, Rose, Boles, Justine, Thompson, Jennifer, Tumukunde, Dinah, Chidziva, Ennie, Mambule, Ivan, Arribas, Jose R, Easterbrook, Philippa J, Hakim, James, Walker, A. Sarah, Mugyenyi, Peter
Published in The New England journal of medicine (17.07.2014)
Published in The New England journal of medicine (17.07.2014)
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Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples
Lewandowski, Kuiama, Xu, Yifei, Pullan, Steven T, Lumley, Sheila F, Foster, Dona, Sanderson, Nicholas, Vaughan, Alison, Morgan, Marcus, Bright, Nicole, Kavanagh, James, Vipond, Richard, Carroll, Miles, Marriott, Anthony C, Gooch, Karen E, Andersson, Monique, Jeffery, Katie, Peto, Timothy E A, Crook, Derrick W, Walker, A Sarah, Matthews, Philippa C
Published in Journal of clinical microbiology (23.12.2019)
Published in Journal of clinical microbiology (23.12.2019)
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Journal Article
A Candida auris Outbreak and Its Control in an Intensive Care Setting
Eyre, David W, Sheppard, Anna E, Madder, Hilary, Moir, Ian, Moroney, Ruth, Quan, T. Phuong, Griffiths, David, George, Sophie, Butcher, Lisa, Morgan, Marcus, Newnham, Robert, Sunderland, Mary, Clarke, Tiphanie, Foster, Dona, Hoffman, Peter, Borman, Andrew M, Johnson, Elizabeth M, Moore, Ginny, Brown, Colin S, Walker, A. Sarah, Peto, Tim E.A, Crook, Derrick W, Jeffery, Katie J.M
Published in The New England journal of medicine (04.10.2018)
Published in The New England journal of medicine (04.10.2018)
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Journal Article
Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology
Orlek, Alex, Stoesser, Nicole, Anjum, Muna F, Doumith, Michel, Ellington, Matthew J, Peto, Tim, Crook, Derrick, Woodford, Neil, Walker, A Sarah, Phan, Hang, Sheppard, Anna E
Published in Frontiers in microbiology (09.02.2017)
Published in Frontiers in microbiology (09.02.2017)
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Journal Article
Transmission of Staphylococcus aureus between health-care workers, the environment, and patients in an intensive care unit: a longitudinal cohort study based on whole-genome sequencing
Price, James R, Dr, Cole, Kevin, BSc, Bexley, Andrew, PhD, Kostiou, Vasiliki, MSc, Eyre, David W, PhD, Golubchik, Tanya, PhD, Wilson, Daniel J, DPhil, Crook, Derrick W, Prof, Walker, A Sarah, Prof, Peto, Timothy E A, Prof, Llewelyn, Martin J, Prof, Paul, John, MD
Published in The Lancet infectious diseases (01.02.2017)
Published in The Lancet infectious diseases (01.02.2017)
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Journal Article
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131
Stoesser, Nicole, Sheppard, Anna E, Pankhurst, Louise, De Maio, Nicola, Moore, Catrin E, Sebra, Robert, Turner, Paul, Anson, Luke W, Kasarskis, Andrew, Batty, Elizabeth M, Kos, Veronica, Wilson, Daniel J, Phetsouvanh, Rattanaphone, Wyllie, David, Sokurenko, Evgeni, Manges, Amee R, Johnson, Timothy J, Price, Lance B, Peto, Timothy E A, Johnson, James R, Didelot, Xavier, Walker, A Sarah, Crook, Derrick W
Published in mBio (22.03.2016)
Published in mBio (22.03.2016)
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Journal Article
Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples
Votintseva, Antonina A, Bradley, Phelim, Pankhurst, Louise, Del Ojo Elias, Carlos, Loose, Matthew, Nilgiriwala, Kayzad, Chatterjee, Anirvan, Smith, E Grace, Sanderson, Nicolas, Walker, Timothy M, Morgan, Marcus R, Wyllie, David H, Walker, A Sarah, Peto, Tim E A, Crook, Derrick W, Iqbal, Zamin
Published in Journal of clinical microbiology (01.05.2017)
Published in Journal of clinical microbiology (01.05.2017)
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Journal Article
Ct threshold values, a proxy for viral load in community SARS-CoV-2 cases, demonstrate wide variation across populations and over time
Walker, A Sarah, Pritchard, Emma, House, Thomas, Robotham, Julie V, Birrell, Paul J, Bell, Iain, Bell, John I, Newton, John N, Farrar, Jeremy, Diamond, Ian, Studley, Ruth, Hay, Jodie, Vihta, Karina-Doris, Peto, Timothy Ea, Stoesser, Nicole, Matthews, Philippa C, Eyre, David W, Pouwels, Koen B
Published in eLife (12.07.2021)
Published in eLife (12.07.2021)
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Journal Article
Anti-spike antibody response to natural SARS-CoV-2 infection in the general population
Wei, Jia, Matthews, Philippa C., Stoesser, Nicole, Maddox, Thomas, Lorenzi, Luke, Studley, Ruth, Bell, John I., Newton, John N., Farrar, Jeremy, Diamond, Ian, Rourke, Emma, Howarth, Alison, Marsden, Brian D., Hoosdally, Sarah, Jones, E. Yvonne, Stuart, David I., Crook, Derrick W., Peto, Tim E. A., Pouwels, Koen B., Walker, A. Sarah, Eyre, David W.
Published in Nature communications (29.10.2021)
Published in Nature communications (29.10.2021)
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Journal Article
Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing
Eyre, David W, Cule, Madeleine L, Wilson, Daniel J, Griffiths, David, Vaughan, Alison, O'Connor, Lily, Ip, Camilla L.C, Golubchik, Tanya, Batty, Elizabeth M, Finney, John M, Wyllie, David H, Didelot, Xavier, Piazza, Paolo, Bowden, Rory, Dingle, Kate E, Harding, Rosalind M, Crook, Derrick W, Wilcox, Mark H, Peto, Tim E.A, Walker, A. Sarah
Published in The New England journal of medicine (26.09.2013)
Published in The New England journal of medicine (26.09.2013)
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Journal Article
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
Bradley, Phelim, Gordon, N. Claire, Walker, Timothy M., Dunn, Laura, Heys, Simon, Huang, Bill, Earle, Sarah, Pankhurst, Louise J., Anson, Luke, de Cesare, Mariateresa, Piazza, Paolo, Votintseva, Antonina A., Golubchik, Tanya, Wilson, Daniel J., Wyllie, David H., Diel, Roland, Niemann, Stefan, Feuerriegel, Silke, Kohl, Thomas A., Ismail, Nazir, Omar, Shaheed V., Smith, E. Grace, Buck, David, McVean, Gil, Walker, A. Sarah, Peto, Tim E. A., Crook, Derrick W., Iqbal, Zamin
Published in Nature communications (21.12.2015)
Published in Nature communications (21.12.2015)
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A growth reference for mid upper arm circumference for age among school age children and adolescents, and validation for mortality: growth curve construction and longitudinal cohort study
Mramba, Lazarus, Ngari, Moses, Mwangome, Martha, Muchai, Lilian, Bauni, Evasius, Walker, A Sarah, Gibb, Diana M, Fegan, Gregory, Berkley, James A
Published in BMJ (Online) (03.08.2017)
Published in BMJ (Online) (03.08.2017)
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