Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review
Si, Yuqi, Du, Jingcheng, Li, Zhao, Jiang, Xiaoqian, Miller, Timothy, Wang, Fei, Jim Zheng, W., Roberts, Kirk
Published in Journal of biomedical informatics (01.03.2021)
Published in Journal of biomedical informatics (01.03.2021)
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Journal Article
Informatics, Data Science, and Artificial Intelligence
Zhu, Lisha, Zheng, W. Jim
Published in JAMA : the journal of the American Medical Association (18.09.2018)
Published in JAMA : the journal of the American Medical Association (18.09.2018)
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Journal Article
Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus
Zhang, Yan, An, Lin, Xu, Jie, Zhang, Bo, Zheng, W. Jim, Hu, Ming, Tang, Jijun, Yue, Feng
Published in Nature communications (21.02.2018)
Published in Nature communications (21.02.2018)
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Journal Article
SAFER: sub-hypergraph attention-based neural network for predicting effective responses to dose combinations
Tang, Yi-Ching, Li, Rongbin, Tang, Jing, Zheng, W Jim, Jiang, Xiaoqian
Published in BMC bioinformatics (30.07.2024)
Published in BMC bioinformatics (30.07.2024)
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Journal Article
Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study
Xiang, Yang, Ji, Hangyu, Zhou, Yujia, Li, Fang, Du, Jingcheng, Rasmy, Laila, Wu, Stephen, Zheng, W Jim, Xu, Hua, Zhi, Degui, Zhang, Yaoyun, Tao, Cui
Published in Journal of medical Internet research (31.07.2020)
Published in Journal of medical Internet research (31.07.2020)
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A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System
Zheng, Fengbo, Shi, Jay, Yang, Yuntao, Zheng, W Jim, Cui, Licong
Published in Journal of the American Medical Informatics Association : JAMIA (01.10.2020)
Published in Journal of the American Medical Informatics Association : JAMIA (01.10.2020)
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Journal Article
Molecular profiling of multiple human cancers defines an inflammatory cancer-associated molecular pattern and uncovers KPNA2 as a uniform poor prognostic cancer marker
Rachidi, Saleh M, Qin, Tingting, Sun, Shaoli, Zheng, W Jim, Li, Zihai
Published in PloS one (25.03.2013)
Published in PloS one (25.03.2013)
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Global skin gene expression analysis of early diffuse cutaneous systemic sclerosis shows a prominent innate and adaptive inflammatory profile
Skaug, Brian, Khanna, Dinesh, Swindell, William R, Hinchcliff, Monique E, Frech, Tracy M, Steen, Virginia D, Hant, Faye N, Gordon, Jessica K, Shah, Ami A, Zhu, Lisha, Zheng, W Jim, Browning, Jeffrey L, Barron, Alexander M S, Wu, Minghua, Visvanathan, Sudha, Baum, Patrick, Franks, Jennifer M, Whitfield, Michael L, Shanmugam, Victoria K, Domsic, Robyn T, Castelino, Flavia V, Bernstein, Elana J, Wareing, Nancy, Lyons, Marka A, Ying, Jun, Charles, Julio, Mayes, Maureen D, Assassi, Shervin
Published in Annals of the rheumatic diseases (01.03.2020)
Published in Annals of the rheumatic diseases (01.03.2020)
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Presence of complete murine viral genome sequences in patient-derived xenografts
Yuan, Zihao, Fan, Xuejun, Zhu, Jay-Jiguang, Fu, Tong-Ming, Wu, Jiaqian, Xu, Hua, Zhang, Ningyan, An, Zhiqiang, Zheng, W. Jim
Published in Nature communications (01.04.2021)
Published in Nature communications (01.04.2021)
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Developing deep learning-based strategies to predict the risk of hepatocellular carcinoma among patients with nonalcoholic fatty liver disease from electronic health records
Li, Zhao, Lan, Lan, Zhou, Yujia, Li, Ruoxing, Chavin, Kenneth D., Xu, Hua, Li, Liang, Shih, David J.H., Jim Zheng, W.
Published in Journal of biomedical informatics (01.04.2024)
Published in Journal of biomedical informatics (01.04.2024)
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Journal Article
HSC-independent definitive hematopoiesis persists into adult life
Kobayashi, Michihiro, Wei, Haichao, Yamanashi, Takashi, Azevedo Portilho, Nathalia, Cornelius, Samuel, Valiente, Noemi, Nishida, Chika, Cheng, Haizi, Latorre, Augusto, Zheng, W. Jim, Kang, Joonsoo, Seita, Jun, Shih, David J., Wu, Jia Qian, Yoshimoto, Momoko
Published in Cell reports (Cambridge) (28.03.2023)
Published in Cell reports (Cambridge) (28.03.2023)
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PleThora: Pleural effusion and thoracic cavity segmentations in diseased lungs for benchmarking chest CT processing pipelines
Kiser, Kendall J., Ahmed, Sara, Stieb, Sonja, Mohamed, Abdallah S. R., Elhalawani, Hesham, Park, Peter Y. S., Doyle, Nathan S., Wang, Brandon J., Barman, Arko, Li, Zhao, Zheng, W. Jim, Fuller, Clifton D., Giancardo, Luca
Published in Medical physics (Lancaster) (01.11.2020)
Published in Medical physics (Lancaster) (01.11.2020)
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Journal Article
Subgingival Microbiome and Specialized Pro-Resolving Lipid Mediator Pathway Profiles Are Correlated in Periodontal Inflammation
Lee, Chun-Teh, Li, Ruoxing, Zhu, Lisha, Tribble, Gena D, Zheng, W Jim, Ferguson, Brittney, Maddipati, Krishna Rao, Angelov, Nikola, Van Dyke, Thomas E
Published in Frontiers in immunology (10.06.2021)
Published in Frontiers in immunology (10.06.2021)
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Journal Article
Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD
Chen, Guocai, Jia, Yuxi, Zhu, Lisha, Li, Ping, Zhang, Lin, Tao, Cui, Jim Zheng, W
Published in BMC medical informatics and decision making (31.01.2019)
Published in BMC medical informatics and decision making (31.01.2019)
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Journal Article
Distinct Profiles of Specialized Pro-resolving Lipid Mediators and Corresponding Receptor Gene Expression in Periodontal Inflammation
Ferguson, Brittney, Bokka, Nishantha R, Maddipati, Krishna Rao, Ayilavarapu, Srinivas, Weltman, Robin, Zhu, Lisha, Chen, Wanqi, Zheng, W Jim, Angelov, Nikola, Van Dyke, Thomas E, Lee, Chun-Teh
Published in Frontiers in immunology (25.06.2020)
Published in Frontiers in immunology (25.06.2020)
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Journal Article
Gene expression dynamic analysis reveals co-activation of Sonic Hedgehog and epidermal growth factor followed by dynamic silencing
Maroufy, Vahed, Shah, Pankil, Asghari, Arvand, Deng, Nan, Le, Rosemarie N U, Ramirez, Juan C, Yaseen, Ashraf, Zheng, W Jim, Umetani, Michihisa, Wu, Hulin
Published in Oncotarget (14.04.2020)
Published in Oncotarget (14.04.2020)
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Journal Article
The IL6/JAK/STAT3 signaling axis is a therapeutic vulnerability in SMARCB1-deficient bladder cancer
Amara, Chandra Sekhar, Kami Reddy, Karthik Reddy, Yuntao, Yang, Chan, Yuen San, Piyarathna, Danthasinghe Waduge Badrajee, Dobrolecki, Lacey Elizabeth, Shih, David J. H., Shi, Zhongcheng, Xu, Jun, Huang, Shixia, Ellis, Matthew J., Apolo, Andrea B., Ballester, Leomar Y., Gao, Jianjun, Hansel, Donna E., Lotan, Yair, Hodges, H. Courtney, Lerner, Seth P., Creighton, Chad J., Sreekumar, Arun, Zheng, W. Jim, Msaouel, Pavlos, Kavuri, Shyam M., Putluri, Nagireddy
Published in Nature communications (14.02.2024)
Published in Nature communications (14.02.2024)
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Yeast Sphingolipid Phospholipase Gene ISC1 Regulates the Spindle Checkpoint by a CDC55-Dependent Mechanism
Matmati, Nabil, Hassan, Bachar H., Ren, Jihui, Shamssedine, Ashraf A., Jeong, Eunmi, Shariff, Baasil, Snider, Justin, Rødkær, Steven V., Chen, Guocai, Mohanty, Bidyut K., Zheng, W. Jim, Obeid, Lina M., Røssel-Larsen, Martin, Færgeman, Nils J., Hannun, Yusuf A.
Published in Molecular and cellular biology (28.05.2020)
Published in Molecular and cellular biology (28.05.2020)
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Evidence for craniofacial enhancer variation underlying nonsyndromic cleft lip and palate
Morris, Vershanna E., Hashmi, S. Shahrukh, Zhu, Lisha, Maili, Lorena, Urbina, Christian, Blackwell, Steven, Greives, Matthew R., Buchanan, Edward P., Mulliken, John B., Blanton, Susan H., Zheng, W. Jim, Hecht, Jacqueline T., Letra, Ariadne
Published in Human genetics (01.10.2020)
Published in Human genetics (01.10.2020)
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