Improved breast cancer histological grading using deep learning
Wang, Y., Acs, B., Robertson, S., Liu, B., Solorzano, L., Wählby, C., Hartman, J., Rantalainen, M.
Published in Annals of oncology (01.01.2022)
Published in Annals of oncology (01.01.2022)
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Regular Use of Depot Medroxyprogesterone Acetate Causes Thinning of the Superficial Lining and Apical Distribution of Human Immunodeficiency Virus Target Cells in the Human Ectocervix
Edfeldt, Gabriella, Lajoie, Julie, Röhl, Maria, Oyugi, Julius, Åhlberg, Alexandra, Khalilzadeh-Binicy, Behnaz, Bradley, Frideborg, Mack, Matthias, Kimani, Joshua, Omollo, Kenneth, Wählby, Carolina, Fowke, Keith R, Broliden, Kristina, Tjernlund, Annelie
Published in The Journal of infectious diseases (01.04.2022)
Published in The Journal of infectious diseases (01.04.2022)
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Morphology-guided graph search for untangling objects: C. elegans analysis
Raviv, Tammy Riklin, Ljosa, V, Conery, A L, Ausubel, F M, Carpenter, A E, Golland, P, Wählby, C
Published in Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention (2010)
Published in Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention (2010)
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Machine learning for cell classification and neighborhood analysis in glioma tissue
Solorzano, Leslie, Wik, Lina, Olsson Bontell, Thomas, Wang, Yuyu, Klemm, Anna H., Öfverstedt, Johan, Jakola, Asgeir S., Östman, Arne, Wählby, Carolina
Published in Cytometry. Part A (01.12.2021)
Published in Cytometry. Part A (01.12.2021)
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A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family
Carreras-Puigvert, Jordi, Zitnik, Marinka, Jemth, Ann-Sofie, Carter, Megan, Unterlass, Judith E., Hallström, Björn, Loseva, Olga, Karem, Zhir, Calderón-Montaño, José Manuel, Lindskog, Cecilia, Edqvist, Per-Henrik, Matuszewski, Damian J., Ait Blal, Hammou, Berntsson, Ronnie P. A., Häggblad, Maria, Martens, Ulf, Studham, Matthew, Lundgren, Bo, Wählby, Carolina, Sonnhammer, Erik L. L., Lundberg, Emma, Stenmark, Pål, Zupan, Blaz, Helleday, Thomas
Published in Nature communications (16.11.2017)
Published in Nature communications (16.11.2017)
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Journal Article
118 Quantitative analysis of immunofluorescence and in situ PLA staining using CellProfiler reveals impaired epidermal lipid processing pathway in ARCI patients with CYP4F22 mutations
Zhang, H., Virtanen, M., Weström, S., Bygum, A., Wählby, C., Vahlquist, A., Törmä, H.
Published in Journal of investigative dermatology (01.09.2016)
Published in Journal of investigative dermatology (01.09.2016)
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Journal Article
Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3
Behanova, Andrea, Avenel, Christophe, Andersson, Axel, Chelebian, Eduard, Klemm, Anna, Wik, Lina, Östman, Arne, Wählby, Carolina
Published in Biological imaging (Cambridge, England) (2023)
Published in Biological imaging (Cambridge, England) (2023)
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Journal Article
Automated Training of Deep Convolutional Neural Networks for Cell Segmentation
Sadanandan, Sajith Kecheril, Ranefall, Petter, Le Guyader, Sylvie, Wählby, Carolina
Published in Scientific reports (10.08.2017)
Published in Scientific reports (10.08.2017)
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Journal Article
Deep Learning in Image Cytometry: A Review
Gupta, Anindya, Harrison, Philip J., Wieslander, Håkan, Pielawski, Nicolas, Kartasalo, Kimmo, Partel, Gabriele, Solorzano, Leslie, Suveer, Amit, Klemm, Anna H., Spjuth, Ola, Sintorn, Ida‐Maria, Wählby, Carolina
Published in Cytometry. Part A (01.04.2019)
Published in Cytometry. Part A (01.04.2019)
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Journal Article
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung
Sountoulidis, Alexandros, Marco Salas, Sergio, Braun, Emelie, Avenel, Christophe, Bergenstråhle, Joseph, Theelke, Jonas, Vicari, Marco, Czarnewski, Paulo, Liontos, Andreas, Abalo, Xesus, Andrusivová, Žaneta, Mirzazadeh, Reza, Asp, Michaela, Li, Xiaofei, Hu, Lijuan, Sariyar, Sanem, Martinez Casals, Anna, Ayoglu, Burcu, Firsova, Alexandra, Michaëlsson, Jakob, Lundberg, Emma, Wählby, Carolina, Sundström, Erik, Linnarsson, Sten, Lundeberg, Joakim, Nilsson, Mats, Samakovlis, Christos
Published in Nature cell biology (2023)
Published in Nature cell biology (2023)
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Journal Article
Automated detection of vascular remodeling in tumor‐draining lymph nodes by the deep‐learning tool HEV‐finder
Bekkhus, Tove, Avenel, Christophe, Hanna, Sabella, Franzén Boger, Mathias, Klemm, Anna, Bacovia, Daniel Vasiliu, Wärnberg, Fredrik, Wählby, Carolina, Ulvmar, Maria H
Published in The Journal of pathology (01.09.2022)
Published in The Journal of pathology (01.09.2022)
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Journal Article
Blind Color Decomposition of Histological Images
Gavrilovic, Milan, Azar, J. C., Lindblad, J., Wahlby, C., Bengtsson, E., Busch, C., Carlbom, I. B.
Published in IEEE transactions on medical imaging (01.06.2013)
Published in IEEE transactions on medical imaging (01.06.2013)
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De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks
Marco Salas, Sergio, Yuan, Xiao, Sylven, Christer, Nilsson, Mats, Wählby, Carolina, Partel, Gabriele
Published in PLoS computational biology (01.08.2022)
Published in PLoS computational biology (01.08.2022)
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Journal Article
Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer
Chelebian, Eduard, Avenel, Christophe, Kartasalo, Kimmo, Marklund, Maja, Tanoglidi, Anna, Mirtti, Tuomas, Colling, Richard, Erickson, Andrew, Lamb, Alastair D, Lundeberg, Joakim, Wählby, Carolina
Published in Cancers (28.09.2021)
Published in Cancers (28.09.2021)
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Journal Article
Impact of Q-Griffithsin anti-HIV microbicide gel in non-human primates: In situ analyses of epithelial and immune cell markers in rectal mucosa
Günaydın, Gökçe, Edfeldt, Gabriella, Garber, David A., Asghar, Muhammad, Noȅl-Romas, Laura, Burgener, Adam, Wählby, Carolina, Wang, Lin, Rohan, Lisa C., Guenthner, Patricia, Mitchell, James, Matoba, Nobuyuki, McNicholl, Janet M., Palmer, Kenneth E., Tjernlund, Annelie, Broliden, Kristina
Published in Scientific reports (02.12.2019)
Published in Scientific reports (02.12.2019)
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Journal Article
Human Immunodeficiency Virus-Infected Women Have High Numbers of CD103-CD8+ T Cells Residing Close to the Basal Membrane of the Ectocervical Epithelium
Gibbs, Anna, Buggert, Marcus, Edfeldt, Gabriella, Ranefall, Petter, Introini, Andrea, Cheuk, Stanley, Martini, Elisa, Eidsmo, Liv, Ball, Terry B, Kimani, Joshua, Kaul, Rupert, Karlsson, Annika C, Wählby, Carolina, Broliden, Kristina, Tjernlund, Annelie
Published in The Journal of infectious diseases (02.07.2018)
Published in The Journal of infectious diseases (02.07.2018)
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