Prevalence of transcription factors in ascomycete and basidiomycete fungi
Todd, Richard B, Zhou, Miaomiao, Ohm, Robin A, Leeggangers, Hendrika A C F, Visser, Loek, de Vries, Ronald P
Published in BMC genomics (20.03.2014)
Published in BMC genomics (20.03.2014)
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Journal Article
The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of d‐galacturonic acid from pectin
Alazi, Ebru, Niu, Jing, Kowalczyk, Joanna E., Peng, Mao, Aguilar Pontes, Maria Victoria, Kan, Jan A. L., Visser, Jaap, Vries, Ronald P., Ram, Arthur F. J.
Published in FEBS letters (01.06.2016)
Published in FEBS letters (01.06.2016)
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Journal Article
Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression
Kowalczyk, Joanna E, Gruben, Birgit S, Battaglia, Evy, Wiebenga, Ad, Majoor, Eline, de Vries, Ronald P
Published in PloS one (18.11.2015)
Published in PloS one (18.11.2015)
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Journal Article
Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
Dhillon, Braham, Feau, Nicolas, Aerts, Andrea L., Beauseigle, Stéphanie, Bernier, Louis, Copeland, Alex, Foster, Adam, Gill, Navdeep, Henrissat, Bernard, Herath, Padmini, LaButti, Kurt M., Levasseur, Anthony, Lindquist, Erika A., Majoor, Eline, Ohm, Robin A., Pangilinan, Jasmyn L., Pribowo, Amadeus, Saddler, John N., Sakalidis, Monique L., de Vries, Ronald P., Grigoriev, Igor V., Goodwin, Stephen B., Tanguay, Philippe, Hamelin, Richard C.
Published in Proceedings of the National Academy of Sciences - PNAS (17.03.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (17.03.2015)
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Journal Article
Construction of a cellulase hyper-expression system in Trichoderma reesei by promoter and enzyme engineering
Zou, Gen, Shi, Shaohua, Jiang, Yanping, van den Brink, Joost, de Vries, Ronald P, Chen, Ling, Zhang, Jun, Ma, Liang, Wang, Chengshu, Zhou, Zhihua
Published in Microbial cell factories (08.02.2012)
Published in Microbial cell factories (08.02.2012)
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Journal Article
Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level
Battaglia, Evy, Benoit, Isabelle, van den Brink, Joost, Wiebenga, Ad, Coutinho, Pedro M, Henrissat, Bernard, de Vries, Ronald P
Published in BMC genomics (17.01.2011)
Published in BMC genomics (17.01.2011)
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Journal Article
Macroalgae Derived Fungi Have High Abilities to Degrade Algal Polymers
Patyshakuliyeva, Aleksandrina, Falkoski, Daniel L, Wiebenga, Ad, Timmermans, Klaas, Vries, Ronald P de
Published in Microorganisms (Basel) (26.12.2019)
Published in Microorganisms (Basel) (26.12.2019)
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Journal Article
Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin
Benoit, Isabelle, Coutinho, Pedro M, Schols, Henk A, Gerlach, Jan P, Henrissat, Bernard, de Vries, Ronald P
Published in BMC genomics (19.07.2012)
Published in BMC genomics (19.07.2012)
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Journal Article
The secretome of the maize pathogen Ustilago maydis
Mueller, Olaf, Kahmann, Regine, Aguilar, Guillermo, Trejo-Aguilar, Blanca, Wu, Andy, de Vries, Ronald P.
Published in Fungal genetics and biology (01.08.2008)
Published in Fungal genetics and biology (01.08.2008)
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Journal Article
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
Li, Jiajia, Chroumpi, Tania, Garrigues, Sandra, Kun, Roland S, Meng, Jiali, Salazar-Cerezo, Sonia, Aguilar-Pontes, Maria Victoria, Zhang, Yu, Tejomurthula, Sravanthi, Lipzen, Anna, Ng, Vivian, Clendinen, Chaevien S, Tolić, Nikola, Grigoriev, Igor V, Tsang, Adrian, Mäkelä, Miia R, Snel, Berend, Peng, Mao, de Vries, Ronald P
Published in Journal of fungi (Basel) (17.12.2022)
Published in Journal of fungi (Basel) (17.12.2022)
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Journal Article
Plant-polysaccharide-degrading enzymes from Basidiomycetes
Rytioja, Johanna, Hildén, Kristiina, Yuzon, Jennifer, Hatakka, Annele, de Vries, Ronald P, Mäkelä, Miia R
Published in Microbiology and molecular biology reviews (01.12.2014)
Published in Microbiology and molecular biology reviews (01.12.2014)
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Journal Article
Modern Taxonomy of Biotechnologically Important Aspergillus and Penicillium Species
Houbraken, Jos, de Vries, Ronald P., Samson, Robert A.
Published in Advances in Applied Microbiology (2014)
Published in Advances in Applied Microbiology (2014)
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Book Chapter
Journal Article
A comparison between the homocyclic aromatic metabolic pathways from plant-derived compounds by bacteria and fungi
Lubbers, Ronnie J.M., Dilokpimol, Adiphol, Visser, Jaap, Mäkelä, Miia R., Hildén, Kristiina S., de Vries, Ronald P.
Published in Biotechnology advances (15.11.2019)
Published in Biotechnology advances (15.11.2019)
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Journal Article
CRISPR/Cas9 technology enables the development of the filamentous ascomycete fungus Penicillium subrubescens as a new industrial enzyme producer
Salazar-Cerezo, Sonia, Kun, Roland S., de Vries, Ronald P., Garrigues, Sandra
Published in Enzyme and microbial technology (01.02.2020)
Published in Enzyme and microbial technology (01.02.2020)
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Journal Article
The Synthetic Potential of Fungal Feruloyl Esterases: A Correlation with Current Classification Systems and Predicted Structural Properties
Antonopoulou, Io, Dilokpimol, Adiphol, Iancu, Laura, Mäkelä, Miia, Varriale, Simona, Cerullo, Gabriella, Hüttner, Silvia, Uthoff, Stefan, Jütten, Peter, Piechot, Alexander, Steinbüchel, Alexander, Olsson, Lisbeth, Faraco, Vincenza, Hildén, Kristiina, de Vries, Ronald, Rova, Ulrika, Christakopoulos, Paul
Published in Catalysts (01.06.2018)
Published in Catalysts (01.06.2018)
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Journal Article
The chimeric GaaR-XlnR transcription factor induces pectinolytic activities in the presence of D-xylose in Aspergillus niger
Kun, Roland S., Garrigues, Sandra, Di Falco, Marcos, Tsang, Adrian, de Vries, Ronald P.
Published in Applied microbiology and biotechnology (01.07.2021)
Published in Applied microbiology and biotechnology (01.07.2021)
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Journal Article