Deciphering the RRM-RNA recognition code: A computational analysis
Roca-Martínez, Joel, Dhondge, Hrishikesh, Sattler, Michael, Vranken, Wim F
Published in PLoS computational biology (01.01.2023)
Published in PLoS computational biology (01.01.2023)
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Journal Article
Auto-encoding NMR chemical shifts from their native vector space to a residue-level biophysical index
Orlando, Gabriele, Raimondi, Daniele, F Vranken, Wim
Published in Nature communications (07.06.2019)
Published in Nature communications (07.06.2019)
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Journal Article
The DynaMine webserver: predicting protein dynamics from sequence
Cilia, Elisa, Pancsa, Rita, Tompa, Peter, Lenaerts, Tom, Vranken, Wim F
Published in Nucleic acids research (01.07.2014)
Published in Nucleic acids research (01.07.2014)
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Journal Article
From protein sequence to dynamics and disorder with DynaMine
Cilia, Elisa, Pancsa, Rita, Tompa, Peter, Lenaerts, Tom, Vranken, Wim F
Published in Nature communications (14.11.2013)
Published in Nature communications (14.11.2013)
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Journal Article
MobiDB: intrinsically disordered proteins in 2021
Piovesan, Damiano, Necci, Marco, Escobedo, Nahuel, Monzon, Alexander Miguel, Hatos, András, Mičetić, Ivan, Quaglia, Federica, Paladin, Lisanna, Ramasamy, Pathmanaban, Dosztányi, Zsuzsanna, Vranken, Wim F, Davey, Norman E, Parisi, Gustavo, Fuxreiter, Monika, Tosatto, Silvio C E
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Journal Article
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
Piovesan, Damiano, Tabaro, Francesco, Paladin, Lisanna, Necci, Marco, Mičetić, Ivan, Camilloni, Carlo, Davey, Norman, Dosztányi, Zsuzsanna, Mészáros, Bálint, Monzon, Alexander M, Parisi, Gustavo, Schad, Eva, Sormanni, Pietro, Tompa, Peter, Vendruscolo, Michele, Vranken, Wim F, Tosatto, Silvio C E
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
RINspector: a Cytoscape app for centrality analyses and DynaMine flexibility prediction
Brysbaert, Guillaume, Lorgouilloux, Kevin, Vranken, Wim F, Lensink, Marc F
Published in Bioinformatics (15.01.2018)
Published in Bioinformatics (15.01.2018)
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Journal Article
Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM
Uchański, Tomasz, Masiulis, Simonas, Fischer, Baptiste, Kalichuk, Valentina, López-Sánchez, Uriel, Zarkadas, Eleftherios, Weckener, Miriam, Sente, Andrija, Ward, Philip, Wohlkönig, Alexandre, Zögg, Thomas, Remaut, Han, Naismith, James H, Nury, Hugues, Vranken, Wim, Aricescu, A Radu, Pardon, Els, Steyaert, Jan
Published in Nature methods (01.01.2021)
Published in Nature methods (01.01.2021)
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Journal Article
AmyPro: a database of proteins with validated amyloidogenic regions
Varadi, Mihaly, De Baets, Greet, Vranken, Wim F, Tompa, Peter, Pancsa, Rita
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity
Pancsa, Rita, Raimondi, Daniele, Cilia, Elisa, Vranken, Wim F.
Published in Biophysical journal (02.02.2016)
Published in Biophysical journal (02.02.2016)
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Journal Article
Large-scale structure-informed multiple sequence alignment of proteins with SIMSApiper
Crauwels, Charlotte, Heidig, Sophie-Luise, Díaz, Adrián, Vranken, Wim F
Published in Bioinformatics (Oxford, England) (02.05.2024)
Published in Bioinformatics (Oxford, England) (02.05.2024)
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Journal Article
Panoramic Perspective on Human Phosphosites
Ramasamy, Pathmanaban, Vandermarliere, Elien, Vranken, Wim F., Martens, Lennart
Published in Journal of proteome research (05.08.2022)
Published in Journal of proteome research (05.08.2022)
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Journal Article
Recommendations of the wwPDB NMR Validation Task Force
Montelione, Gaetano T., Nilges, Michael, Bax, Ad, Güntert, Peter, Herrmann, Torsten, Richardson, Jane S., Schwieters, Charles D., Vranken, Wim F., Vuister, Geerten W., Wishart, David S., Berman, Helen M., Kleywegt, Gerard J., Markley, John L.
Published in Structure (London) (03.09.2013)
Published in Structure (London) (03.09.2013)
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Journal Article
DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins
Raimondi, Daniele, Tanyalcin, Ibrahim, Ferté, Julien, Gazzo, Andrea, Orlando, Gabriele, Lenaerts, Tom, Rooman, Marianne, Vranken, Wim
Published in Nucleic acids research (03.07.2017)
Published in Nucleic acids research (03.07.2017)
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Journal Article
DisProt: intrinsic protein disorder annotation in 2020
Hatos, András, Hajdu-Soltész, Borbála, Monzon, Alexander M, Palopoli, Nicolas, Álvarez, Lucía, Aykac-Fas, Burcu, Bassot, Claudio, Benítez, Guillermo I, Bevilacqua, Martina, Chasapi, Anastasia, Chemes, Lucia, Davey, Norman E, Davidović, Radoslav, Dunker, A Keith, Elofsson, Arne, Gobeill, Julien, Foutel, Nicolás S González, Sudha, Govindarajan, Guharoy, Mainak, Horvath, Tamas, Iglesias, Valentin, Kajava, Andrey V, Kovacs, Orsolya P, Lamb, John, Lambrughi, Matteo, Lazar, Tamas, Leclercq, Jeremy Y, Leonardi, Emanuela, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Maiani, Emiliano, Manso, José A, Marino-Buslje, Cristina, Martínez-Pérez, Elizabeth, Mészáros, Bálint, Mičetić, Ivan, Minervini, Giovanni, Murvai, Nikoletta, Necci, Marco, Ouzounis, Christos A, Pajkos, Mátyás, Paladin, Lisanna, Pancsa, Rita, Papaleo, Elena, Parisi, Gustavo, Pasche, Emilie, Barbosa Pereira, Pedro J, Promponas, Vasilis J, Pujols, Jordi, Quaglia, Federica, Ruch, Patrick, Salvatore, Marco, Schad, Eva, Szabo, Beata, Szaniszló, Tamás, Tamana, Stella, Tantos, Agnes, Veljkovic, Nevena, Ventura, Salvador, Vranken, Wim, Dosztányi, Zsuzsanna, Tompa, Peter, Tosatto, Silvio C E, Piovesan, Damiano
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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