PDBe: Protein Data Bank in Europe
Velankar, S., Alhroub, Y., Best, C., Caboche, S., Conroy, M. J., Dana, J. M., Fernandez Montecelo, M. A., van Ginkel, G., Golovin, A., Gore, S. P., Gutmanas, A., Haslam, P., Hendrickx, P. M. S., Heuson, E., Hirshberg, M., John, M., Lagerstedt, I., Mir, S., Newman, L. E., Oldfield, T. J., Patwardhan, A., Rinaldi, L., Sahni, G., Sanz-García, E., Sen, S., Slowley, R., Suarez-Uruena, A., Swaminathan, G. J., Symmons, M. F., Vranken, W. F., Wainwright, M., Kleywegt, G. J.
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
Remediation of the protein data bank archive
Henrick, Kim, Feng, Zukang, Bluhm, Wolfgang F, Dimitropoulos, Dimitris, Doreleijers, Jurgen F, Dutta, Shuchismita, Flippen-Anderson, Judith L, Ionides, John, Kamada, Chisa, Krissinel, Eugene, Lawson, Catherine L, Markley, John L, Nakamura, Haruki, Newman, Richard, Shimizu, Yukiko, Swaminathan, Jawahar, Velankar, Sameer, Ory, Jeramia, Ulrich, Eldon L, Vranken, Wim, Westbrook, John, Yamashita, Reiko, Yang, Huanwang, Young, Jasmine, Yousufuddin, Muhammed, Berman, Helen M
Published in Nucleic acids research (01.01.2008)
Published in Nucleic acids research (01.01.2008)
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Journal Article
E-MSD: the European Bioinformatics Institute Macromolecular Structure Database
Boutselakis, H., Dimitropoulos, D., Fillon, J., Golovin, A., Henrick, K., Hussain, A., Ionides, J., John, M., Keller, P. A., Krissinel, E., McNeil, P., Naim, A., Newman, R., Oldfield, T., Pineda, J., Rachedi, A., Copeland, J., Sitnov, A., Sobhany, S., Suarez-Uruena, A., Swaminathan, J., Tagari, M., Tate, J., Tromm, S., Velankar, S., Vranken, W.
Published in Nucleic acids research (01.01.2003)
Published in Nucleic acids research (01.01.2003)
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Journal Article
E-MSD: improving data deposition and structure quality
Tagari, M., Tate, J., Swaminathan, G. J., Newman, R., Naim, A., Vranken, W., Kapopoulou, A., Hussain, A., Fillon, J., Henrick, K., Velankar, S.
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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Journal Article
NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB
Doreleijers, Jurgen F., Vranken, Wim F., Schulte, Christopher, Markley, John L., Ulrich, Eldon L., Vriend, Gert, Vuister, Geerten W.
Published in Nucleic acids research (01.01.2012)
Published in Nucleic acids research (01.01.2012)
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Journal Article
E‐MSD: an integrated data resource for bioinformatics
Golovin, A., Oldfield, T. J., Tate, J. G., Velankar, S., Barton, G. J., Boutselakis, H., Dimitropoulos, D., Fillon, J., Hussain, A., Ionides, J. M. C., John, M., Keller, P. A., Krissinel, E., McNeil, P., Naim, A., Newman, R., Pajon, A., Pineda, J., Rachedi, A., Copeland, J., Sitnov, A., Sobhany, S., Suarez‐Uruena, A., Swaminathan, G. J., Tagari, M., Tromm, S., Vranken, W., Henrick, K.
Published in Nucleic acids research (01.01.2004)
Published in Nucleic acids research (01.01.2004)
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Journal Article
A framework for scientific data modeling and automated software development
Fogh, Rasmus H., Boucher, Wayne, Vranken, Wim F., Pajon, Anne, Stevens, Tim J., Bhat, T. N., Westbrook, John, Ionides, John M. C., Laue, Ernest D.
Published in Bioinformatics (15.04.2005)
Published in Bioinformatics (15.04.2005)
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Journal Article
PDBe: Protein Data Bank in Europe
Velankar, S, Best, C, Beuth, B, Boutselakis, C.H, Cobley, N, Sousa Da Silva, A.W, Dimitropoulos, D, Golovin, A, Hirshberg, M, John, M, Krissinel, E.B, Newman, R, Oldfield, T, Pajon, A, Penkett, C.J, Pineda-Castillo, J, Sahni, G, Sen, S, Slowley, R, Suarez-Uruena, A, Swaminathan, J, van Ginkel, G, Vranken, W.F, Henrick, K, Kleywegt, G.J
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank
Nederveen, Aart J., Doreleijers, Jurgen F., Vranken, Wim, Miller, Zachary, Spronk, Chris A.E.M., Nabuurs, Sander B., Güntert, Peter, Livny, Miron, Markley, John L., Nilges, Michael, Ulrich, Eldon L., Kaptein, Robert, Bonvin, Alexandre M.J.J.
Published in Proteins, structure, function, and bioinformatics (01.06.2005)
Published in Proteins, structure, function, and bioinformatics (01.06.2005)
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Journal Article
Conformational Features of a Synthetic Cyclic Peptide Corresponding to the Complete V3 Loop of the RF HIV‐1 Strain in Water and Water/Trifluoroethanol Solutions
Vranken, Wim F., Budesinsky, Milos, Martins, José C., Fant, Franky, Boulez, Kris, Gras‐Masse, Hélène, Borremans, Frans A. M.
Published in European journal of biochemistry (15.02.1996)
Published in European journal of biochemistry (15.02.1996)
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Journal Article
DRESS: a database of REfined solution NMR structures
Nabuurs, Sander B., Nederveen, Aart J., Vranken, Wim, Doreleijers, Jurgen F., Bonvin, Alexandre M.J.J., Vuister, Geerten W., Vriend, Gert, Spronk, Christian A.E.M.
Published in Proteins, structure, function, and bioinformatics (15.05.2004)
Published in Proteins, structure, function, and bioinformatics (15.05.2004)
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Journal Article
The CCPN data model for NMR spectroscopy: Development of a software pipeline
Vranken, Wim F., Boucher, Wayne, Stevens, Tim J., Fogh, Rasmus H., Pajon, Anne, Llinas, Miguel, Ulrich, Eldon L., Markley, John L., Ionides, John, Laue, Ernest D.
Published in Proteins, structure, function, and bioinformatics (01.06.2005)
Published in Proteins, structure, function, and bioinformatics (01.06.2005)
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Journal Article
BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures
Doreleijers, Jurgen F, Nederveen, Aart J, Vranken, Wim, Lin, Jundong, Bonvin, Alexandre M J J, Kaptein, Robert, Markley, John L, Ulrich, Eldon L
Published in Journal of biomolecular NMR (01.05.2005)
Published in Journal of biomolecular NMR (01.05.2005)
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Journal Article
PDBe: Protein Data Bank in Europe
Velankar, Sameer, Alhroub, Younes, Alili, Anaëlle, Best, Christoph, Boutselakis, Harry C, Caboche, Ségolène, Conroy, Matthew J, Dana, Jose M, van Ginkel, Glen, Golovin, Adel, Gore, Swanand P, Gutmanas, Aleksandras, Haslam, Pauline, Hirshberg, Miriam, John, Melford, Lagerstedt, Ingvar, Mir, Saqib, Newman, Laurence E, Oldfield, Tom J, Penkett, Chris J, Pineda-Castillo, Jorge, Rinaldi, Luana, Sahni, Gaurav, Sawka, Grégoire, Sen, Sanchayita, Slowley, Robert, Sousa da Silva, Alan Wilter, Suarez-Uruena, Antonio, Swaminathan, G Jawahar, Symmons, Martyn F, Vranken, Wim F, Wainwright, Michael, Kleywegt, Gerard J
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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Journal Article
Remediation of the protein data bank archive
Henrick, K., Feng, Z., Bluhm, W. F., Dimitropoulos, D., Doreleijers, J. F., Dutta, S., Flippen-Anderson, J. L., Ionides, J., Kamada, C., Krissinel, E., Lawson, C. L., Markley, J. L., Nakamura, H., Newman, R., Shimizu, Y., Swaminathan, J., Velankar, S., Ory, J., Ulrich, E. L., Vranken, W., Westbrook, J., Yamashita, R., Yang, H., Young, J., Yousufuddin, M., Berman, H. M.
Published in Nucleic acids research (11.12.2007)
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Published in Nucleic acids research (11.12.2007)
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