STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
Szklarczyk, Damian, Gable, Annika L, Lyon, David, Junge, Alexander, Wyder, Stefan, Huerta-Cepas, Jaime, Simonovic, Milan, Doncheva, Nadezhda T, Morris, John H, Bork, Peer, Jensen, Lars J, Mering, Christian von
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
Get full text
Journal Article
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
Szklarczyk, Damian, Gable, Annika L, Nastou, Katerina C, Lyon, David, Kirsch, Rebecca, Pyysalo, Sampo, Doncheva, Nadezhda T, Legeay, Marc, Fang, Tao, Bork, Peer, Jensen, Lars J, von Mering, Christian
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
Get full text
Journal Article
Web Resource
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
Huerta-Cepas, Jaime, Szklarczyk, Damian, Heller, Davide, Hernández-Plaza, Ana, Forslund, Sofia K, Cook, Helen, Mende, Daniel R, Letunic, Ivica, Rattei, Thomas, Jensen, Lars J, von Mering, Christian, Bork, Peer
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
Get full text
Journal Article
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible
Szklarczyk, Damian, Morris, John H, Cook, Helen, Kuhn, Michael, Wyder, Stefan, Simonovic, Milan, Santos, Alberto, Doncheva, Nadezhda T, Roth, Alexander, Bork, Peer, Jensen, Lars J, von Mering, Christian
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
Get full text
Journal Article
ChromID identifies the protein interactome at chromatin marks
Villaseñor, Rodrigo, Pfaendler, Ramon, Ambrosi, Christina, Butz, Stefan, Giuliani, Sara, Bryan, Elana, Sheahan, Thomas W, Gable, Annika L, Schmolka, Nina, Manzo, Massimiliano, Wirz, Joël, Feller, Christian, von Mering, Christian, Aebersold, Ruedi, Voigt, Philipp, Baubec, Tuncay
Published in Nature biotechnology (01.06.2020)
Published in Nature biotechnology (01.06.2020)
Get full text
Journal Article
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
Maistrenko, Oleksandr M, Mende, Daniel R, Luetge, Mechthild, Hildebrand, Falk, Schmidt, Thomas S B, Li, Simone S, Rodrigues, João F Matias, von Mering, Christian, Pedro Coelho, Luis, Huerta-Cepas, Jaime, Sunagawa, Shinichi, Bork, Peer
Published in The ISME Journal (01.05.2020)
Published in The ISME Journal (01.05.2020)
Get full text
Journal Article
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
Stecher, Bärbel, Robbiani, Riccardo, Walker, Alan W, Westendorf, Astrid M, Barthel, Manja, Kremer, Marcus, Chaffron, Samuel, Macpherson, Andrew J, Buer, Jan, Parkhill, Julian, Dougan, Gordon, von Mering, Christian, Hardt, Wolf-Dietrich
Published in PLoS biology (01.10.2007)
Published in PLoS biology (01.10.2007)
Get full text
Journal Article
STRING v10: protein–protein interaction networks, integrated over the tree of life
Szklarczyk, Damian, Franceschini, Andrea, Wyder, Stefan, Forslund, Kristoffer, Heller, Davide, Huerta-Cepas, Jaime, Simonovic, Milan, Roth, Alexander, Santos, Alberto, Tsafou, Kalliopi P., Kuhn, Michael, Bork, Peer, Jensen, Lars J., von Mering, Christian
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
Get full text
Journal Article
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
Fullam, Anthony, Letunic, Ivica, Schmidt, Thomas S B, Ducarmon, Quinten R, Karcher, Nicolai, Khedkar, Supriya, Kuhn, Michael, Larralde, Martin, Maistrenko, Oleksandr M, Malfertheiner, Lukas, Milanese, Alessio, Rodrigues, Joao Frederico Matias, Sanchis-López, Claudia, Schudoma, Christian, Szklarczyk, Damian, Sunagawa, Shinichi, Zeller, Georg, Huerta-Cepas, Jaime, von Mering, Christian, Bork, Peer, Mende, Daniel R
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
Get full text
Journal Article
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses
Huang, Ruizhu, Soneson, Charlotte, Germain, Pierre-Luc, Schmidt, Thomas S B, Mering, Christian Von, Robinson, Mark D
Published in Genome Biology (17.05.2021)
Published in Genome Biology (17.05.2021)
Get full text
Journal Article
Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast
Bodenmiller, Bernd, Wanka, Stefanie, Kraft, Claudine, Urban, Jörg, Campbell, David, Pedrioli, Patrick G, Gerrits, Bertran, Picotti, Paola, Lam, Henry, Vitek, Olga, Brusniak, Mi-Youn, Roschitzki, Bernd, Zhang, Chao, Shokat, Kevan M, Schlapbach, Ralph, Colman-Lerner, Alejandro, Nolan, Garry P, Nesvizhskii, Alexey I, Peter, Matthias, Loewith, Robbie, von Mering, Christian, Aebersold, Ruedi
Published in Science signaling (21.12.2010)
Published in Science signaling (21.12.2010)
Get more information
Journal Article
Correction to ‘The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets’
Szklarczyk, Damian, Gable, Annika L, Nastou, Katerina C, Lyon, David, Kirsch, Rebecca, Pyysalo, Sampo, Doncheva, Nadezhda T, Legeay, Marc, Fang, Tao, Bork, Peer, Jensen, Lars J, von Mering, Christian
Published in Nucleic acids research (11.10.2021)
Published in Nucleic acids research (11.10.2021)
Get full text
Journal Article
Comparative assessment of large-scale data sets of protein-protein interactions
Bork, Peer, von Mering, Christian, Krause, Roland, Snel, Berend, Cornell, Michael, Oliver, Stephen G, Fields, Stanley
Published in Nature (London) (23.05.2002)
Published in Nature (London) (23.05.2002)
Get full text
Journal Article
Comparative Metagenomics of Microbial Communities
Tringe, Susannah Green, von Mering, Christian, Kobayashi, Arthur, Salamov, Asaf A, Chen, Kevin, Chang, Hwai W, Podar, Mircea, Short, Jay M, Mathur, Eric J, Detter, John C, Bork, Peer, Hugenholtz, Philip, Rubin, Edward M
Published in Science (American Association for the Advancement of Science) (22.04.2005)
Published in Science (American Association for the Advancement of Science) (22.04.2005)
Get full text
Journal Article
Genome-wide small interfering RNA screens reveal VAMP3 as a novel host factor required for Uukuniemi virus late penetration
Meier, Roger, Franceschini, Andrea, Horvath, Peter, Tetard, Marilou, Mancini, Roberta, von Mering, Christian, Helenius, Ari, Lozach, Pierre-Yves
Published in Journal of virology (01.08.2014)
Published in Journal of virology (01.08.2014)
Get full text
Journal Article
RNAi screen of Salmonella invasion shows role of COPI in membrane targeting of cholesterol and Cdc42
Hardt, Wolf-Dietrich, Misselwitz, Benjamin, Dilling, Sabrina, Vonaesch, Pascale, Sacher, Raphael, Snijder, Berend, Schlumberger, Markus, Rout, Samuel, Stark, Manuel, Mering, Christian von, Pelkmans, Lucas
Published in Molecular systems biology (15.03.2011)
Published in Molecular systems biology (15.03.2011)
Get full text
Journal Article
Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition
Daga, Neha, Eicher, Simone, Kannan, Abhilash, Casanova, Alain, Low, Shyan H, Kreibich, Saskia, Andritschke, Daniel, Emmenlauer, Mario, Jenkins, Jeremy L, Hardt, Wolf-Dietrich, Greber, Urs F, Dehio, Christoph, von Mering, Christian
Published in Nucleic acids research (12.10.2018)
Published in Nucleic acids research (12.10.2018)
Get full text
Journal Article