Learning mutational signatures and their multidimensional genomic properties with TensorSignatures
Vöhringer, Harald, Hoeck, Arne Van, Cuppen, Edwin, Gerstung, Moritz
Published in Nature communications (15.06.2021)
Published in Nature communications (15.06.2021)
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Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
Fu, Yu, Jung, Alexander W, Torne, Ramon Viñas, Gonzalez, Santiago, Vöhringer, Harald, Shmatko, Artem, Yates, Lucy R, Jimenez-Linan, Mercedes, Moore, Luiza, Gerstung, Moritz
Published in Nature cancer (01.08.2020)
Published in Nature cancer (01.08.2020)
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Mutational signatures are jointly shaped by DNA damage and repair
Volkova, Nadezda V, Meier, Bettina, González-Huici, Víctor, Bertolini, Simone, Gonzalez, Santiago, Vöhringer, Harald, Abascal, Federico, Martincorena, Iñigo, Campbell, Peter J, Gartner, Anton, Gerstung, Moritz
Published in Nature communications (01.05.2020)
Published in Nature communications (01.05.2020)
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P1218: A REPROGRAMMING OF THE LYMPH NODE MICROENVIRONMENT UNDERLIES LOSS OF COMPARTMENTALISATION IN AGGRESSIVE LYMPHOMAS
Mathioudaki, Anna, Czernilofsky, Felix, Jopp‐Saile, Lea, Lutz, Raphael, Vonflicht, Dominik, Wang, XI, Baertsch, Marc‐A., Vohringer, Harald, Roider, Tobias, Mammen, Johannes, Ordonez‐Rueda, Diana, Pabst, Caroline, Huber, Wolfgang, Trumpp, Andreas, Müller‐Tidow, Carsten, Nolan, Gary P., Benes, Vladimir, Zaugg, Judith B., Hübschmann, Daniel, Haas, Simon, Dietrich, Sascha
Published in HemaSphere (08.08.2023)
Published in HemaSphere (08.08.2023)
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P1206: A SINGLE‐CELL MULTI‐OMIC AND SPATIAL ATLAS OF NODAL B CELL NON‐HODGKIN LYMPHOMAS REVEALS PLASTICITY IN B CELL MATURATION AS A DRIVER OF INTRATUMOR HETEROGENEITY
Fitzgerald, Donnacha, Kibler, Artur, Baertsch, Marc‐A., Roider, Tobias, Vohringer, Harald, Horlova, Anastasiia, Mathioudaki, Anna, Budeus, Bettina, Knoll, Mareike, Chung, Erin, Mammen, Johannes, Caille, Leandra, Passerini, Verena, Czernilofsky, Felix, LI, Linsha, Weigert, Oliver, Zaugg, Judith B., Nolan, Gary P., Seifert, Marc, Huber, Wolfgang, Dietrich, Sacha
Published in HemaSphere (08.08.2023)
Published in HemaSphere (08.08.2023)
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HH-suite3 for fast remote homology detection and deep protein annotation
Steinegger, Martin, Meier, Markus, Mirdita, Milot, Vöhringer, Harald, Haunsberger, Stephan J, Söding, Johannes
Published in BMC bioinformatics (14.09.2019)
Published in BMC bioinformatics (14.09.2019)
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Extensive heterogeneity in somatic mutation and selection in the human bladder
Lawson, Andrew R J, Abascal, Federico, Coorens, Tim H H, Hooks, Yvette, O'Neill, Laura, Latimer, Calli, Raine, Keiran, Sanders, Mathijs A, Warren, Anne Y, Mahbubani, Krishnaa T A, Bareham, Bethany, Butler, Timothy M, Harvey, Luke M R, Cagan, Alex, Menzies, Andrew, Moore, Luiza, Colquhoun, Alexandra J, Turner, William, Thomas, Benjamin, Gnanapragasam, Vincent, Williams, Nicholas, Rassl, Doris M, Vöhringer, Harald, Zumalave, Sonia, Nangalia, Jyoti, Tubío, José M C, Gerstung, Moritz, Saeb-Parsy, Kourosh, Stratton, Michael R, Campbell, Peter J, Mitchell, Thomas J, Martincorena, Iñigo
Published in Science (American Association for the Advancement of Science) (02.10.2020)
Published in Science (American Association for the Advancement of Science) (02.10.2020)
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SpatialData: an open and universal data framework for spatial omics
Marconato, Luca, Palla, Giovanni, Yamauchi, Kevin A, Virshup, Isaac, Heidari, Elyas, Treis, Tim, Vierdag, Wouter-Michiel, Toth, Marcella, Stockhaus, Sonja, Shrestha, Rahul B, Rombaut, Benjamin, Pollaris, Lotte, Lehner, Laurens, Vöhringer, Harald, Kats, Ilia, Saeys, Yvan, Saka, Sinem K, Huber, Wolfgang, Gerstung, Moritz, Moore, Josh, Theis, Fabian J, Stegle, Oliver
Published in Nature methods (20.03.2024)
Published in Nature methods (20.03.2024)
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Single-Cell Multi-Omic and Spatial Analysis of Nodal B Cell Non-Hodgkin Lymphomas Reveals Plasticity in B Cell Maturation As a Driver of Intratumor Heterogeneity
Fitzgerald, Donnacha, Roider, Tobias, Baertsch, Marc-A., Vöhringer, Harald, Knoll, Mareike, Budeus, Bettina, Kibler, Artur, Mathioudaki, Anna, Caillé, Léandra, Li, Linsha, Mammen, Johannes, Seifert, Marc, Huber, Wolfgang, Dietrich, Sascha
Published in Blood (15.11.2022)
Published in Blood (15.11.2022)
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Multimodal and spatially resolved profiling identifies distinct patterns of T cell infiltration in nodal B cell lymphoma entities
Roider, Tobias, Baertsch, Marc A, Fitzgerald, Donnacha, Vöhringer, Harald, Brinkmann, Berit J, Czernilofsky, Felix, Knoll, Mareike, Llaó-Cid, Laura, Mathioudaki, Anna, Faßbender, Bianca, Herbon, Maxime, Lautwein, Tobias, Bruch, Peter-Martin, Liebers, Nora, Schürch, Christian M, Passerini, Verena, Seifert, Marc, Brobeil, Alexander, Mechtersheimer, Gunhild, Müller-Tidow, Carsten, Weigert, Oliver, Seiffert, Martina, Nolan, Garry P, Huber, Wolfgang, Dietrich, Sascha
Published in Nature cell biology (01.03.2024)
Published in Nature cell biology (01.03.2024)
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Journal Article
Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis
Fu, Yu, Jung, Alexander W, Ramon Vinas Torne, Gonzalez, Santiago, Vohringer, Harald, Shmatko, Artem, Yates, Lucy, Jimenez-Linan, Mercedes, Moore, Luiza, Gerstung, Moritz
Published in bioRxiv (12.02.2020)
Published in bioRxiv (12.02.2020)
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Life without mismatch repair
Sanders, Mathijs A, Vöhringer, Harald S, ster, Victoria J, Moore, Luiza, Campbell, Brittany B, Hooks, Yvette, Edwards, Melissa, Bianchi, Vanessa, Coorens, Tim, Butler, Timothy M, Lee-Six, Henry, Robinson, Philip S, Flensburg, Christoffer, Bilardi, Rebecca A, Majewski, Ian J, Reschke, Agnes, Cairney, Elizabeth, Crooks, Bruce, Lindhorst, Scott, Stearns, Duncan, Tomboc, Patrick, Mcdermott, Ultan, Stratton, Michael, Shlien, Adam, Gerstung, Moritz, Tabori, Uri, Campbell, Peter
Published in bioRxiv (15.04.2021)
Published in bioRxiv (15.04.2021)
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