Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
Varoquaux, Nelle, Cole, Benjamin, Gao, Cheng, Pierroz, Grady, Baker, Christopher R., Patel, Dhruv, Madera, Mary, Jeffers, Tim, Hollingsworth, Joy, Sievert, Julie, Yoshinaga, Yuko, Owiti, Judith A., Singan, Vasanth R., DeGraaf, Stephanie, Xu, Ling, Blow, Matthew J., Harrison, Maria J., Visel, Axel, Jansson, Christer, Niyogi, Krishna K., Hutmacher, Robert, Coleman-Derr, Devin, O’Malley, Ronan C., Taylor, John W., Dahlberg, Jeffery, Vogel, John P., Lemaux, Peggy G., Purdom, Elizabeth
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
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Journal Article
A truncated NLR protein, TIR-NBS2, is required for activated defense responses in the exo70B1 mutant
Zhao, Ting, Rui, Lu, Li, Juan, Nishimura, Marc T, Vogel, John P, Liu, Na, Liu, Simu, Zhao, Yaofei, Dangl, Jeffery L, Tang, Dingzhong
Published in PLoS genetics (01.01.2015)
Published in PLoS genetics (01.01.2015)
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Journal Article
Division in PIN-Mediated Auxin Patterning during Organ Initiation in Grasses
O'Connor, Devin L, Runions, Adam, Sluis, Aaron, Bragg, Jennifer, Vogel, John P, Prusinkiewicz, Przemyslaw, Hake, Sarah, Vernoux, Teva
Published in PLoS computational biology (01.01.2014)
Published in PLoS computational biology (01.01.2014)
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Journal Article
Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity
Raissig, Michael T., Abrash, Emily, Bettadapur, Akhila, Vogel, John P., Bergmann, Dominique C.
Published in Proceedings of the National Academy of Sciences - PNAS (19.07.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (19.07.2016)
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Journal Article
Plant Pan-Genomics Comes of Age
Lei, Li, Goltsman, Eugene, Goodstein, David, Wu, Guohong Albert, Rokhsar, Daniel S, Vogel, John P
Published in Annual review of plant biology (17.06.2021)
Published in Annual review of plant biology (17.06.2021)
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Journal Article
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
Gordon, Sean P., Contreras-Moreira, Bruno, Levy, Joshua J., Djamei, Armin, Czedik-Eysenberg, Angelika, Tartaglio, Virginia S., Session, Adam, Martin, Joel, Cartwright, Amy, Katz, Andrew, Singan, Vasanth R., Goltsman, Eugene, Barry, Kerrie, Dinh-Thi, Vinh Ha, Chalhoub, Boulos, Diaz-Perez, Antonio, Sancho, Ruben, Lusinska, Joanna, Wolny, Elzbieta, Nibau, Candida, Doonan, John H., Mur, Luis A. J., Plott, Chris, Jenkins, Jerry, Hazen, Samuel P., Lee, Scott J., Shu, Shengqiang, Goodstein, David, Rokhsar, Daniel, Schmutz, Jeremy, Hasterok, Robert, Catalan, Pilar, Vogel, John P.
Published in Nature communications (29.07.2020)
Published in Nature communications (29.07.2020)
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Journal Article
Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses
Brutnell, Thomas P, Bennetzen, Jeffrey L, Vogel, John P
Published in Annual review of plant biology (29.04.2015)
Published in Annual review of plant biology (29.04.2015)
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Journal Article
PHYTOCHROME C regulation of photoperiodic flowering via PHOTOPERIOD1 is mediated by EARLY FLOWERING 3 in Brachypodium distachyon
Woods, Daniel P, Li, Weiya, Sibout, Richard, Shao, Mingqin, Laudencia-Chingcuanco, Debbie, Vogel, John P, Dubcovsky, Jorge, Amasino, Richard M
Published in PLoS genetics (10.05.2023)
Published in PLoS genetics (10.05.2023)
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Journal Article
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
Gordon, Sean P., Contreras-Moreira, Bruno, Woods, Daniel P., Des Marais, David L., Burgess, Diane, Shu, Shengqiang, Stritt, Christoph, Roulin, Anne C., Schackwitz, Wendy, Tyler, Ludmila, Martin, Joel, Lipzen, Anna, Dochy, Niklas, Phillips, Jeremy, Barry, Kerrie, Geuten, Koen, Budak, Hikmet, Juenger, Thomas E., Amasino, Richard, Caicedo, Ana L., Goodstein, David, Davidson, Patrick, Mur, Luis A. J., Figueroa, Melania, Freeling, Michael, Catalan, Pilar, Vogel, John P.
Published in Nature communications (19.12.2017)
Published in Nature communications (19.12.2017)
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Journal Article
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
Gao, Cheng, Xu, Ling, Montoya, Liliam, Madera, Mary, Hollingsworth, Joy, Chen, Liang, Purdom, Elizabeth, Singan, Vasanth, Vogel, John, Hutmacher, Robert B., Dahlberg, Jeffery A., Coleman-Derr, Devin, Lemaux, Peggy G., Taylor, John W.
Published in Nature communications (05.07.2022)
Published in Nature communications (05.07.2022)
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Journal Article
Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
Gao, Cheng, Montoya, Liliam, Xu, Ling, Madera, Mary, Hollingsworth, Joy, Purdom, Elizabeth, Singan, Vasanth, Vogel, John, Hutmacher, Robert B., Dahlberg, Jeffery A., Coleman-Derr, Devin, Lemaux, Peggy G., Taylor, John W.
Published in Nature communications (07.01.2020)
Published in Nature communications (07.01.2020)
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Journal Article
Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata
Raissig, Michael T., Matos, Juliana L., Gil, M. Ximena Anleu, Kornfeld, Ari, Bettadapur, Akhila, Abrash, Emily, Allison, Hannah R., Badgley, Grayson, Vogel, John P., Berry, Joseph A., Bergmann, Dominique C.
Published in Science (American Association for the Advancement of Science) (17.03.2017)
Published in Science (American Association for the Advancement of Science) (17.03.2017)
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Journal Article
Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
Brisson, Vanessa L., Schmidt, Jennifer E., Northen, Trent R., Vogel, John P., Gaudin, Amélie C. M.
Published in Scientific reports (30.10.2019)
Published in Scientific reports (30.10.2019)
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Journal Article
Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
Sancho, Rubén, Cantalapiedra, Carlos P, López-Alvarez, Diana, Gordon, Sean P, Vogel, John P, Catalán, Pilar, Contreras-Moreira, Bruno
Published in The New phytologist (01.06.2018)
Published in The New phytologist (01.06.2018)
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Journal Article
Transposition of HOPPLA in siRNA-deficient plants suggests a limited effect of the environment on retrotransposon mobility in Brachypodium distachyon
Thieme, Michael, Minadakis, Nikolaos, Himber, Christophe, Keller, Bettina, Xu, Wenbo, Rutowicz, Kinga, Matteoli, Calvin, Böhrer, Marcel, Rymen, Bart, Laudencia-Chingcuanco, Debbie, Vogel, John P, Sibout, Richard, Stritt, Christoph, Blevins, Todd, Roulin, Anne C
Published in PLoS genetics (12.03.2024)
Published in PLoS genetics (12.03.2024)
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